Variant report

Variant	rs2420117
Chromosome Location	chr10:117555854-117555855
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10490917	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11197416	1.00[CHB][hapmap]
rs11592116	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11598532	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12360079	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1476795	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1541466	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1544543	0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1547947	0.87[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17093700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17269525	0.85[JPT][hapmap]
rs17354680	0.85[JPT][hapmap]
rs1860402	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1981662	0.85[ASN][1000 genomes]
rs2024179	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2068463	0.82[JPT][hapmap]
rs2244439	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2254619	1.00[CHB][hapmap]
rs2420106	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2420114	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2420118	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2420120	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2420123	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2490719	0.85[ASN][1000 genomes]
rs2532701	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532704	0.85[ASN][1000 genomes]
rs2804146	1.00[CHB][hapmap]
rs2804166	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2860341	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2860364	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2901061	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2901094	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2907525	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2907543	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2907548	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2907557	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2907560	0.90[EUR][1000 genomes]
rs2907562	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2907571	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907574	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907579	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907581	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2960641	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2960656	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2960657	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2960669	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960673	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960674	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960685	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960686	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960688	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960689	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960690	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2960692	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2960722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3110773	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6585361	0.84[EUR][1000 genomes]
rs6585363	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6585364	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72830991	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72830992	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117555600-117556000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:117555800-117556400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:117555800-117556800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr10:117555800-117563800	Weak transcription	Aorta	Aorta
5	chr10:117555800-117574000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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