Variant report
| Variant | rs2420118 |
|---|---|
| Chromosome Location | chr10:117568910-117568911 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10490917 | 0.87[EUR][1000 genomes] |
| rs11592116 | 0.81[EUR][1000 genomes] |
| rs11598532 | 0.80[EUR][1000 genomes] |
| rs1476795 | 0.82[EUR][1000 genomes] |
| rs1541466 | 0.87[EUR][1000 genomes] |
| rs1544543 | 0.82[EUR][1000 genomes] |
| rs1547947 | 0.81[EUR][1000 genomes] |
| rs2024179 | 0.87[EUR][1000 genomes] |
| rs2420114 | 0.89[EUR][1000 genomes] |
| rs2420117 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2420120 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2420123 | 0.89[EUR][1000 genomes] |
| rs2615889 | 0.83[ASN][1000 genomes] |
| rs2804166 | 0.81[EUR][1000 genomes] |
| rs2860364 | 0.95[EUR][1000 genomes] |
| rs2901061 | 0.88[EUR][1000 genomes] |
| rs2907548 | 0.82[EUR][1000 genomes] |
| rs2907557 | 0.88[EUR][1000 genomes] |
| rs2907560 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2907562 | 0.89[EUR][1000 genomes] |
| rs2907571 | 0.97[EUR][1000 genomes] |
| rs2907574 | 0.95[EUR][1000 genomes] |
| rs2907579 | 0.89[EUR][1000 genomes] |
| rs2907581 | 0.81[EUR][1000 genomes] |
| rs2960656 | 0.82[EUR][1000 genomes] |
| rs2960657 | 0.82[EUR][1000 genomes] |
| rs2960669 | 0.94[EUR][1000 genomes] |
| rs2960673 | 0.91[EUR][1000 genomes] |
| rs2960674 | 0.87[EUR][1000 genomes] |
| rs2960685 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2960686 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2960688 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2960689 | 0.97[EUR][1000 genomes] |
| rs2960692 | 0.84[EUR][1000 genomes] |
| rs3110773 | 0.96[EUR][1000 genomes] |
| rs6585361 | 0.84[EUR][1000 genomes] |
| rs6585363 | 0.90[EUR][1000 genomes] |
| rs6585364 | 0.91[EUR][1000 genomes] |
| rs72830991 | 0.81[EUR][1000 genomes] |
| rs72830992 | 0.81[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:117555800-117574000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr10:117561800-117577000 | Weak transcription | HSMM | muscle |
