Variant report

Variant	rs1547947
Chromosome Location	chr10:117547467-117547468
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10490917	0.87[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10490988	1.00[CHD][hapmap]
rs11197416	0.87[CHD][hapmap]
rs11592116	0.92[ASN][1000 genomes]
rs11598532	0.92[ASN][1000 genomes]
rs12360079	0.81[ASN][1000 genomes]
rs1476795	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1541466	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.96[ASN][1000 genomes]
rs1544543	0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs17093700	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17269525	0.82[JPT][hapmap]
rs17269882	0.87[CHD][hapmap]
rs17270580	1.00[CHD][hapmap]
rs17270699	1.00[CHD][hapmap]
rs17354680	0.82[JPT][hapmap]
rs17354968	1.00[CHD][hapmap]
rs1860402	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.81[ASN][1000 genomes]
rs1981662	0.81[ASN][1000 genomes]
rs1981663	0.87[CHD][hapmap]
rs2024179	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.96[ASN][1000 genomes]
rs2244439	0.81[ASN][1000 genomes]
rs2249295	0.87[CHD][hapmap]
rs2254619	1.00[CHD][hapmap]
rs2420114	0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2420117	0.87[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2420118	0.81[EUR][1000 genomes]
rs2420120	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420123	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2490719	0.81[ASN][1000 genomes]
rs2532701	0.81[ASN][1000 genomes]
rs2532704	0.81[ASN][1000 genomes]
rs2615874	0.87[CHD][hapmap]
rs2615884	0.85[CHD][hapmap]
rs2804164	0.86[GIH][hapmap];0.86[TSI][hapmap]
rs2804165	0.83[TSI][hapmap]
rs2804166	0.81[ASN][1000 genomes]
rs2860341	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs2860364	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901061	0.86[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2901094	1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2907525	0.81[ASN][1000 genomes]
rs2907543	0.80[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2907548	0.96[ASN][1000 genomes]
rs2907557	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2907562	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2907571	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2907574	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2907579	1.00[ASN][1000 genomes]
rs2907581	0.92[ASN][1000 genomes]
rs2960641	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs2960656	0.92[ASN][1000 genomes]
rs2960657	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2960669	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960673	0.96[ASN][1000 genomes]
rs2960674	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.96[ASN][1000 genomes]
rs2960685	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960686	0.81[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960688	1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960689	0.81[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960690	0.81[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2960692	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2960722	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3110773	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6585361	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6585363	0.93[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6585364	0.93[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72830991	0.92[ASN][1000 genomes]
rs72830992	0.92[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117540000-117548200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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