Variant report

Variant	rs17270580
Chromosome Location	chr10:117695712-117695713
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10490986	0.94[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10490987	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10490988	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10787611	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs10787612	0.94[CEU][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs1476795	1.00[CHD][hapmap]
rs1541466	1.00[CHD][hapmap]
rs1547947	1.00[CHD][hapmap]
rs17093700	1.00[CHD][hapmap]
rs17093786	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17269525	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs17269882	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17269917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17270699	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17354680	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs17354968	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs2024179	1.00[CHD][hapmap]
rs2054533	1.00[CEU][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs2249295	1.00[CEU][hapmap];0.87[CHD][hapmap];0.81[TSI][hapmap];0.92[EUR][1000 genomes]
rs2263622	0.92[EUR][1000 genomes]
rs2615874	0.95[CEU][hapmap];0.87[CHD][hapmap]
rs2615880	0.94[EUR][1000 genomes]
rs2615882	0.91[EUR][1000 genomes]
rs2615884	0.94[CEU][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2615889	0.94[CEU][hapmap]
rs2620959	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2620960	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2620961	0.94[CEU][hapmap];0.82[JPT][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2860341	1.00[CHD][hapmap]
rs2901061	1.00[CHD][hapmap]
rs2901094	0.95[CEU][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap]
rs2960641	1.00[CHD][hapmap]
rs2960674	1.00[CHD][hapmap]
rs2960686	1.00[CHD][hapmap]
rs2960689	1.00[CHD][hapmap]
rs41284364	0.85[EUR][1000 genomes]
rs55782493	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55917752	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56045626	0.95[EUR][1000 genomes]
rs57211763	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58744761	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61319078	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67778998	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs67945700	0.96[EUR][1000 genomes]
rs7100412	0.95[CEU][hapmap]
rs72832833	0.90[EUR][1000 genomes]
rs72832834	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72832836	0.95[EUR][1000 genomes]
rs73365760	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17270580	NANOS1	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117692600-117697600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:117693600-117696200	Weak transcription	HSMM	muscle
3	chr10:117693800-117708600	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:117694400-117697800	Enhancers	NHDF-Ad	bronchial
5	chr10:117694600-117696000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:117694800-117696200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:117695200-117696200	Weak transcription	Osteobl	bone
8	chr10:117695200-117696600	Weak transcription	Adipose Nuclei	Adipose
9	chr10:117695400-117696600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:117695600-117695800	Enhancers	NHLF	lung

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