Variant report

Variant	rs2249295
Chromosome Location	chr10:117682532-117682533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1034938	1.00[CHB][hapmap]
rs10490986	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs10490987	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10490988	0.89[CEU][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];0.86[EUR][1000 genomes]
rs10787611	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs10787612	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs1476795	0.87[CHD][hapmap]
rs1541466	0.87[CHD][hapmap]
rs1547947	0.87[CHD][hapmap]
rs17093700	0.87[CHD][hapmap]
rs17093786	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17269525	0.89[CEU][hapmap]
rs17269882	1.00[CEU][hapmap];0.83[GIH][hapmap];0.89[EUR][1000 genomes]
rs17269917	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17270580	1.00[CEU][hapmap];0.87[CHD][hapmap];0.81[TSI][hapmap];0.92[EUR][1000 genomes]
rs17270699	0.95[CEU][hapmap];0.87[CHD][hapmap];0.88[EUR][1000 genomes]
rs17354680	0.95[CEU][hapmap]
rs17354968	0.84[CEU][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1860402	0.87[CHD][hapmap]
rs2024179	0.87[CHD][hapmap]
rs2054533	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes]
rs2254619	0.87[CHD][hapmap]
rs2263622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2615870	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs2615874	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.85[JPT][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];0.89[ASN][1000 genomes]
rs2615880	0.98[EUR][1000 genomes]
rs2615882	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2615884	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs2615889	0.94[CEU][hapmap];0.85[CHB][hapmap]
rs2620959	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs2620960	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[EUR][1000 genomes]
rs2620961	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2620962	0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs2804164	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs2804165	0.85[CHB][hapmap]
rs2860341	0.87[CHD][hapmap]
rs2901061	0.87[CHD][hapmap]
rs2901094	0.95[CEU][hapmap];0.87[CHD][hapmap]
rs2907560	0.85[CHB][hapmap]
rs2960641	0.87[CHD][hapmap]
rs2960674	0.87[CHD][hapmap]
rs2960686	0.87[CHD][hapmap]
rs2960689	0.87[CHD][hapmap]
rs41284364	0.83[EUR][1000 genomes]
rs55782493	0.93[EUR][1000 genomes]
rs55917752	0.93[EUR][1000 genomes]
rs56045626	0.88[EUR][1000 genomes]
rs57211763	0.93[EUR][1000 genomes]
rs58744761	0.93[EUR][1000 genomes]
rs61319078	0.89[EUR][1000 genomes]
rs67778998	0.90[EUR][1000 genomes]
rs67945700	0.91[EUR][1000 genomes]
rs7100412	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs72832833	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72832834	0.91[EUR][1000 genomes]
rs72832836	0.90[EUR][1000 genomes]
rs73365760	0.93[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2249295	NANOS1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117658200-117695400	Weak transcription	Aorta	Aorta
2	chr10:117679000-117692800	Weak transcription	HSMM	muscle

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