Variant report

Variant	rs17093700
Chromosome Location	chr10:117635798-117635799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10490917	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10490988	1.00[CHD][hapmap]
rs11197416	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs11592116	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11598532	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12360079	0.84[ASN][1000 genomes]
rs1476795	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1541466	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1544543	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1547947	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17269525	0.82[JPT][hapmap]
rs17269882	0.87[CHD][hapmap]
rs17270580	1.00[CHD][hapmap]
rs17270699	1.00[CHD][hapmap]
rs17354680	0.82[JPT][hapmap]
rs17354968	1.00[CHD][hapmap]
rs1860402	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs1981662	0.84[ASN][1000 genomes]
rs2024179	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2244439	0.84[ASN][1000 genomes]
rs2249295	0.87[CHD][hapmap]
rs2254619	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2420106	1.00[CHB][hapmap]
rs2420114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2420117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2420120	0.88[ASN][1000 genomes]
rs2420123	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2490719	0.84[ASN][1000 genomes]
rs2532701	0.84[ASN][1000 genomes]
rs2532704	0.84[ASN][1000 genomes]
rs2615874	0.87[CHD][hapmap]
rs2615884	0.85[CHD][hapmap]
rs2804146	1.00[CHB][hapmap]
rs2804164	0.81[GIH][hapmap];0.82[TSI][hapmap]
rs2804166	0.84[ASN][1000 genomes]
rs2860341	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs2860364	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2901061	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs2901094	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2907525	0.84[ASN][1000 genomes]
rs2907543	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2907548	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2907557	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2907560	0.80[EUR][1000 genomes]
rs2907562	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2907571	0.88[ASN][1000 genomes]
rs2907574	0.88[ASN][1000 genomes]
rs2907579	0.88[ASN][1000 genomes]
rs2907581	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2960641	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs2960656	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2960657	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2960669	0.91[ASN][1000 genomes]
rs2960673	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2960674	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2960685	0.88[ASN][1000 genomes]
rs2960686	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.88[ASN][1000 genomes]
rs2960688	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2960689	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.88[ASN][1000 genomes]
rs2960690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2960692	0.84[ASN][1000 genomes]
rs2960722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3110773	0.88[ASN][1000 genomes]
rs6585363	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6585364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6585368	0.85[YRI][hapmap]
rs72830991	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72830992	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117633200-117636400	Weak transcription	Fetal Stomach	stomach
2	chr10:117634000-117657800	Weak transcription	Aorta	Aorta
3	chr10:117634400-117636000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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