Variant report

Variant	rs10490987
Chromosome Location	chr10:117689878-117689879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10490986	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10490988	0.89[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10787611	0.94[CEU][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes]
rs10787612	0.94[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs17093786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17269525	0.89[CEU][hapmap];0.82[CHB][hapmap]
rs17269882	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17269917	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17270580	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17270699	0.95[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17354680	0.95[CEU][hapmap];0.82[CHB][hapmap]
rs17354968	0.84[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs2054533	1.00[CEU][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2249295	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2263622	0.92[EUR][1000 genomes]
rs2615874	0.95[CEU][hapmap]
rs2615880	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2615882	0.91[EUR][1000 genomes]
rs2615884	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs2615889	0.94[CEU][hapmap]
rs2620959	0.94[CEU][hapmap];0.82[CHB][hapmap];0.96[EUR][1000 genomes]
rs2620960	1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2620961	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs2901094	0.95[CEU][hapmap]
rs41284364	0.86[EUR][1000 genomes]
rs55782493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55917752	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56045626	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57211763	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58744761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61064771	0.86[AFR][1000 genomes]
rs61170750	0.86[AFR][1000 genomes]
rs61319078	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67778998	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67945700	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7100412	0.95[CEU][hapmap]
rs72832833	0.91[EUR][1000 genomes]
rs72832834	0.95[EUR][1000 genomes]
rs72832836	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73365746	0.86[AFR][1000 genomes]
rs73365760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117658200-117695400	Weak transcription	Aorta	Aorta
2	chr10:117679000-117692800	Weak transcription	HSMM	muscle
3	chr10:117689600-117690000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:117689800-117690400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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