Variant report

Variant	rs3781514
Chromosome Location	chr10:117861297-117861298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10490988	1.00[ASW][hapmap]
rs12779467	0.93[EUR][1000 genomes]
rs12781677	1.00[YRI][hapmap]
rs17094083	1.00[ASW][hapmap];0.93[CEU][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes]
rs17269882	1.00[ASW][hapmap]
rs17270699	1.00[ASW][hapmap]
rs17354968	1.00[ASW][hapmap]
rs3781517	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3900762	1.00[YRI][hapmap]
rs8416	1.00[ASW][hapmap]
rs952918	1.00[YRI][hapmap]
rs953920	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv34187	chr10:117857916-117894117	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3781514	TCF7L2	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117857000-117867600	Weak transcription	Liver	Liver
2	chr10:117857000-117872800	Weak transcription	HSMM	muscle
3	chr10:117858200-117872200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:117858400-117863400	Weak transcription	Fetal Stomach	stomach
5	chr10:117858600-117863200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:117859200-117863400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:117859200-117864800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:117859200-117875000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:117859600-117861400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:117860200-117862000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:117860600-117864400	Enhancers	Fetal Muscle Leg	muscle
12	chr10:117861000-117861800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:117861200-117861800	Enhancers	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links