Variant report

Variant	rs3781517
Chromosome Location	chr10:117861759-117861760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12779467	0.88[EUR][1000 genomes]
rs12781677	1.00[YRI][hapmap]
rs17094083	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs3781514	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3900762	1.00[YRI][hapmap]
rs952918	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv34187	chr10:117857916-117894117	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117857000-117867600	Weak transcription	Liver	Liver
2	chr10:117857000-117872800	Weak transcription	HSMM	muscle
3	chr10:117858200-117872200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:117858400-117863400	Weak transcription	Fetal Stomach	stomach
5	chr10:117858600-117863200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:117859200-117863400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:117859200-117864800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:117859200-117875000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:117860200-117862000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:117860600-117864400	Enhancers	Fetal Muscle Leg	muscle
11	chr10:117861000-117861800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:117861200-117861800	Enhancers	HSMMtube	muscle
13	chr10:117861400-117861800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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