Variant report

Variant	rs3900762
Chromosome Location	chr10:117873786-117873787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117873712..117876077-chr10:117876946..117879196,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12776813	0.90[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12778200	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12778389	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12781677	1.00[YRI][hapmap]
rs17094114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34806371	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3781514	1.00[YRI][hapmap]
rs3781517	1.00[YRI][hapmap]
rs3781529	0.91[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3781531	0.92[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67861661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952918	0.92[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv34187	chr10:117857916-117894117	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117859200-117875000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:117864400-117875200	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:117869000-117885200	Strong transcription	Fetal Stomach	stomach
4	chr10:117870800-117875000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:117871000-117874200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:117871200-117876800	Weak transcription	Liver	Liver
7	chr10:117871400-117874600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:117872000-117874600	Enhancers	NH-A	brain
9	chr10:117872400-117883800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:117872600-117874400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:117872600-117874600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:117872800-117874400	Enhancers	HSMM	muscle
13	chr10:117873000-117874400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:117873000-117874600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr10:117873000-117874800	Enhancers	NHDF-Ad	bronchial
16	chr10:117873000-117874800	Enhancers	Osteobl	bone
17	chr10:117873200-117874200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:117873200-117874200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:117873200-117874200	Bivalent Enhancer	Brain Hippocampus Middle	brain
20	chr10:117873200-117874600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:117873200-117875200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:117873200-117875200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:117873400-117874000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:117873400-117874000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:117873400-117874000	Bivalent Enhancer	Brain Substantia Nigra	brain
26	chr10:117873400-117874200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:117873400-117874800	Enhancers	Brain Anterior Caudate	brain
28	chr10:117873400-117876400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:117873600-117873800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:117873600-117874000	Enhancers	NHEK	skin
31	chr10:117873600-117874000	Enhancers	NHLF	lung
32	chr10:117873600-117874200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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