Variant report

Variant	rs2804144
Chromosome Location	chr10:117436252-117436253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1034939	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1034940	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10885800	0.84[JPT][hapmap]
rs11197423	0.85[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12219110	0.80[TSI][hapmap]
rs12413701	0.80[JPT][hapmap]
rs17093513	1.00[ASW][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.86[MEX][hapmap];0.84[ASN][1000 genomes]
rs2255909	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.86[MEX][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2420122	0.83[JPT][hapmap]
rs2532725	0.87[GIH][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap]
rs2804147	0.91[TSI][hapmap]
rs2804153	1.00[ASW][hapmap];0.86[MEX][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2804155	0.89[ASN][1000 genomes]
rs2804158	0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2804144	HABP2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117432800-117440600	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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