Variant report

Variant	rs12219110
Chromosome Location	chr10:117427484-117427485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:117423127..117425169-chr10:117426970..117428635,2	MCF-7	breast:
2	chr10:117424165..117428344-chr10:117465614..117471494,6	MCF-7	breast:
3	chr10:117421405..117427759-chr10:118027934..118034540,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10510010	0.95[CEU][hapmap]
rs11197361	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap]
rs11197362	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs11197365	0.94[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs11197376	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197385	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11197397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197398	0.81[EUR][1000 genomes]
rs11592415	0.80[CEU][hapmap]
rs11594315	0.80[CEU][hapmap]
rs11595244	0.80[CEU][hapmap]
rs12219313	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12220978	0.95[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12766032	0.95[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12766984	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12769284	0.80[CEU][hapmap]
rs12770825	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12772971	0.80[CEU][hapmap]
rs12774040	0.80[CEU][hapmap]
rs12776022	0.80[CEU][hapmap]
rs12777776	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12783715	0.84[CEU][hapmap]
rs12784215	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17724010	0.80[CEU][hapmap];0.80[TSI][hapmap]
rs17724028	0.80[CEU][hapmap]
rs17802247	0.80[CEU][hapmap]
rs17803175	0.80[CEU][hapmap]
rs17803797	0.80[CEU][hapmap]
rs17803963	0.80[CEU][hapmap]
rs1953601	0.80[CEU][hapmap]
rs1953602	0.80[CEU][hapmap]
rs2184706	0.80[CEU][hapmap]
rs2255909	1.00[LWK][hapmap]
rs2532725	1.00[ASW][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2532726	1.00[ASW][hapmap];0.86[MEX][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2532733	0.81[EUR][1000 genomes]
rs2804144	0.80[TSI][hapmap]
rs2901057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35198933	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4364974	0.80[CEU][hapmap]
rs4582885	0.80[CEU][hapmap]
rs7100684	0.80[CEU][hapmap]
rs988011	1.00[LWK][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12219110	HABP2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117425800-117427800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr10:117427200-117433200	Weak transcription	HSMM	muscle

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