Variant report

Variant	rs12772971
Chromosome Location	chr10:117334992-117334993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:117329095..117331684-chr10:117332445..117335246,2	MCF-7	breast:
2	chr10:117334756..117337004-chr10:118031570..118034484,2	MCF-7	breast:
3	chr10:117333748..117335350-chr10:117337696..117340534,2	K562	blood:

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10509993	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10510010	0.86[CEU][hapmap];0.91[JPT][hapmap]
rs10787571	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10787572	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10885717	0.86[JPT][hapmap]
rs10885719	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11197361	0.85[CEU][hapmap]
rs11197362	0.86[CEU][hapmap]
rs11197365	0.82[CEU][hapmap]
rs11592415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11593278	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11593829	0.86[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs11593878	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11594315	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11595244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11595630	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11598455	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12217493	0.81[JPT][hapmap]
rs12219110	0.80[CEU][hapmap]
rs12220978	0.85[CEU][hapmap]
rs12766032	0.85[CEU][hapmap]
rs12766497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12769284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12770375	0.86[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12770825	0.86[CEU][hapmap]
rs12774040	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs12775300	0.82[ASN][1000 genomes]
rs12776022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12777776	0.86[CEU][hapmap]
rs12781613	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12782477	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs12783715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12784624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1414632	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1414636	0.95[CEU][hapmap]
rs17093112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17723399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17724010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17724028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17724768	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17802247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17803175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17803797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17803963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1953601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1953602	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap]
rs2184706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2532725	0.81[JPT][hapmap]
rs34421131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34733774	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs35031734	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35104556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35493012	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs35717629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35742449	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36093626	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4364974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4582885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs587603	0.81[JPT][hapmap]
rs599353	0.81[JPT][hapmap]
rs61880985	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs61881037	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs633656	0.83[CHB][hapmap]
rs653295	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs659351	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7077286	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7100684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7476255	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117327800-117357200	Weak transcription	Aorta	Aorta
2	chr10:117334800-117335000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr10:117334800-117335200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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