Variant report

Variant	rs17724010
Chromosome Location	chr10:117273552-117273553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117270127..117272329-chr10:117272470..117274118,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10509993	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs10510010	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs10787571	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10787572	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10885710	0.83[CHB][hapmap]
rs10885712	0.86[CHB][hapmap]
rs10885713	0.86[CHB][hapmap]
rs10885714	0.86[CHB][hapmap]
rs10885717	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10885719	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11197361	0.85[CEU][hapmap];0.93[TSI][hapmap]
rs11197362	0.85[CEU][hapmap]
rs11197365	0.82[CEU][hapmap]
rs11592415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11593278	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11593829	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs11593878	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs11594315	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11595244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11595630	1.00[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs11598455	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12217493	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12219110	0.80[CEU][hapmap];0.80[TSI][hapmap]
rs12220978	0.85[CEU][hapmap]
rs12221189	0.84[CHB][hapmap]
rs12766032	0.85[CEU][hapmap];0.93[TSI][hapmap]
rs12766497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12769284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12770375	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12770825	0.85[CEU][hapmap]
rs12772971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12774040	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs12775300	0.85[ASN][1000 genomes]
rs12776022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12777776	0.85[CEU][hapmap]
rs12781613	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap]
rs12782477	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs12783715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12784624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1414632	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1414636	0.95[CEU][hapmap];0.85[TSI][hapmap]
rs17093112	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap]
rs17723399	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap]
rs17724028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17724768	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17802247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17803175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17803797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17803963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1953601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap]
rs1953602	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap]
rs2184706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2532725	0.81[JPT][hapmap];0.80[TSI][hapmap]
rs2901047	0.84[CHB][hapmap]
rs34421131	0.92[ASN][1000 genomes]
rs34733774	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35031734	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35104556	0.92[ASN][1000 genomes]
rs35493012	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35717629	0.92[ASN][1000 genomes]
rs35742449	0.92[ASN][1000 genomes]
rs36093626	0.92[ASN][1000 genomes]
rs4364974	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap]
rs4582885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap]
rs587603	0.81[JPT][hapmap]
rs599353	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs61880985	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881037	0.92[ASN][1000 genomes]
rs633656	0.83[CHB][hapmap]
rs633684	0.85[CHB][hapmap]
rs653295	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs659351	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7077286	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7100684	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73373334	0.85[AFR][1000 genomes]
rs7476255	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7476664	0.81[YRI][hapmap]
rs951875	1.00[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17724010	HABP2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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