Variant report

Variant	rs10885719
Chromosome Location	chr10:117218828-117218829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 168 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs10444034	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs10509993	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1071575	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10736240	1.00[CHB][hapmap];0.88[CHD][hapmap];0.80[ASN][1000 genomes]
rs10787557	0.83[ASN][1000 genomes]
rs10787558	0.80[ASN][1000 genomes]
rs10787571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs10787572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10885677	0.80[ASN][1000 genomes]
rs10885680	0.93[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10885681	0.93[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10885682	0.80[ASN][1000 genomes]
rs10885683	0.93[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap]
rs10885687	0.80[ASN][1000 genomes]
rs10885692	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs10885700	0.82[ASN][1000 genomes]
rs10885702	0.83[ASN][1000 genomes]
rs10885705	0.81[ASN][1000 genomes]
rs10885706	0.85[ASN][1000 genomes]
rs10885710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10885712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885714	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885715	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10885716	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885717	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885718	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197149	0.80[ASN][1000 genomes]
rs11197150	1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs11197159	0.80[ASN][1000 genomes]
rs11197160	0.80[ASN][1000 genomes]
rs11197162	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11197163	0.90[JPT][hapmap]
rs11197165	0.92[CHB][hapmap]
rs11197167	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs11197168	0.93[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs11197180	0.81[ASN][1000 genomes]
rs11197203	0.83[ASN][1000 genomes]
rs11197222	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11525277	0.80[ASN][1000 genomes]
rs1158406	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11592415	0.86[CHB][hapmap]
rs11593278	0.86[CHB][hapmap]
rs11593829	0.90[CHB][hapmap]
rs11593878	0.85[CHB][hapmap]
rs11594315	0.85[CHB][hapmap]
rs11595244	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11595630	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1170884	0.93[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs12217493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12221189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12254019	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs12357053	0.93[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs12358411	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs12766497	0.81[CHB][hapmap]
rs12769284	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12772971	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12776022	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs12781613	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12782477	0.92[CHB][hapmap]
rs12783715	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs12784624	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1389647	0.93[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs1389648	0.93[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs1414632	0.92[CHB][hapmap];1.00[YRI][hapmap]
rs1565832	0.93[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs17093112	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs17723399	0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs17724010	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs17724028	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs17724768	0.83[CHB][hapmap]
rs17802247	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs17803175	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs17803797	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs17803963	0.85[CHB][hapmap]
rs1953601	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2050706	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2172669	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs2184706	0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs2420075	0.80[ASN][1000 genomes]
rs2420077	0.80[ASN][1000 genomes]
rs2453212	0.83[ASN][1000 genomes]
rs2484863	0.82[CHD][hapmap];0.83[ASN][1000 genomes]
rs2485965	0.83[ASN][1000 genomes]
rs2485969	0.81[ASN][1000 genomes]
rs2485970	0.93[CHB][hapmap];0.83[ASN][1000 genomes]
rs2492980	0.92[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs2901047	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2901048	0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs34938864	0.80[ASN][1000 genomes]
rs4274144	0.81[YRI][hapmap]
rs4364974	0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs4582885	0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs5004584	0.93[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs581518	0.83[ASN][1000 genomes]
rs583767	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs585908	0.83[ASN][1000 genomes]
rs586786	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587603	0.86[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs588467	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs589508	0.93[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs590713	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs593796	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs595299	0.83[ASN][1000 genomes]
rs595487	0.83[ASN][1000 genomes]
rs595931	0.83[ASN][1000 genomes]
rs595976	0.83[ASN][1000 genomes]
rs596404	0.83[ASN][1000 genomes]
rs596776	0.83[ASN][1000 genomes]
rs599353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs600259	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs606204	0.93[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs608759	0.83[ASN][1000 genomes]
rs611389	0.83[ASN][1000 genomes]
rs611492	0.83[ASN][1000 genomes]
rs614722	0.83[ASN][1000 genomes]
rs615178	0.83[ASN][1000 genomes]
rs618602	0.83[ASN][1000 genomes]
rs61880825	0.80[ASN][1000 genomes]
rs620937	0.85[ASN][1000 genomes]
rs627118	0.83[ASN][1000 genomes]
rs627748	0.83[ASN][1000 genomes]
rs628063	0.83[ASN][1000 genomes]
rs628403	0.83[ASN][1000 genomes]
rs629968	0.83[ASN][1000 genomes]
rs630362	0.83[ASN][1000 genomes]
rs631520	0.85[ASN][1000 genomes]
rs631918	0.82[ASN][1000 genomes]
rs633656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs633684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs634553	0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs641453	0.83[ASN][1000 genomes]
rs643922	0.83[ASN][1000 genomes]
rs646623	0.83[ASN][1000 genomes]
rs646783	0.83[ASN][1000 genomes]
rs648830	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs653295	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap]
rs655292	0.93[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs657139	0.83[ASN][1000 genomes]
rs657545	0.93[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs659351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs660317	0.93[CHB][hapmap];0.82[ASN][1000 genomes]
rs660790	0.83[ASN][1000 genomes]
rs664158	0.83[ASN][1000 genomes]
rs665122	0.93[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs667976	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs669221	0.93[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs671278	0.83[ASN][1000 genomes]
rs675802	0.83[ASN][1000 genomes]
rs677146	0.86[ASN][1000 genomes]
rs677212	0.83[ASN][1000 genomes]
rs677575	0.93[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs678664	0.83[ASN][1000 genomes]
rs681011	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs685328	0.93[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs688218	0.83[ASN][1000 genomes]
rs688490	0.93[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs688611	0.93[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs693986	0.83[ASN][1000 genomes]
rs7077286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078695	0.93[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap]
rs7100684	0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs7476255	0.86[CHB][hapmap]
rs7912050	0.80[ASN][1000 genomes]
rs840105	0.82[ASN][1000 genomes]
rs840106	0.82[ASN][1000 genomes]
rs923907	0.93[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs979009	0.83[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10885719	HABP2	cis	cerebellum	SCAN
rs10885719	C8orf79	trans	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117207200-117220200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:117218200-117220200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:117218400-117219400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:117218400-117219400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:117218800-117219200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr10:117218800-117219800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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