Variant report

Variant	rs677575
Chromosome Location	chr10:117160413-117160414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 163 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:163)

rs_ID	r²[population]
rs10444034	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1071575	0.85[ASN][1000 genomes]
rs10736240	1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[TSI][hapmap];0.89[ASN][1000 genomes]
rs10787555	0.86[TSI][hapmap]
rs10787557	0.87[ASN][1000 genomes]
rs10787558	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10787571	0.93[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap]
rs10787572	0.93[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs10885669	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10885671	0.80[MEX][hapmap];0.88[TSI][hapmap]
rs10885672	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10885675	0.80[MEX][hapmap];0.89[TSI][hapmap]
rs10885676	1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs10885677	0.89[ASN][1000 genomes]
rs10885680	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10885681	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.92[TSI][hapmap];0.89[ASN][1000 genomes]
rs10885682	0.89[ASN][1000 genomes]
rs10885683	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.92[TSI][hapmap];0.88[ASN][1000 genomes]
rs10885687	0.89[ASN][1000 genomes]
rs10885692	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10885696	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10885700	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885702	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885705	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885706	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885710	0.92[CHB][hapmap]
rs10885712	0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs10885713	0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs10885714	0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs10885715	0.80[ASN][1000 genomes]
rs10885716	0.85[ASN][1000 genomes]
rs10885717	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10885718	0.83[ASN][1000 genomes]
rs10885719	0.93[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs11197107	0.83[ASN][1000 genomes]
rs11197115	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11197126	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs11197139	0.86[ASN][1000 genomes]
rs11197149	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197150	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197159	0.89[ASN][1000 genomes]
rs11197160	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197162	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs11197163	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs11197165	1.00[CHB][hapmap]
rs11197167	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11197168	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197172	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11197180	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197203	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197222	0.83[ASN][1000 genomes]
rs11517121	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11525277	0.89[ASN][1000 genomes]
rs11527959	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1158406	0.85[ASN][1000 genomes]
rs1170884	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12217493	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs12221189	0.92[CHB][hapmap]
rs12254019	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12357053	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12358411	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs1264768	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1268460	0.83[ASN][1000 genomes]
rs12782477	0.92[CHB][hapmap]
rs1389647	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs1389648	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1414632	0.92[CHB][hapmap]
rs1565832	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17722681	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1899721	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2050705	0.83[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2050706	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2172669	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs2256046	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2265930	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2420075	0.89[ASN][1000 genomes]
rs2420077	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2420078	0.83[CEU][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2453212	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2484863	1.00[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485965	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485969	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2485970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492980	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2492981	0.87[ASN][1000 genomes]
rs2901047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2901048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34938864	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4752724	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs5004584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581518	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs583767	0.85[ASN][1000 genomes]
rs585908	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs586786	0.83[ASN][1000 genomes]
rs587603	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs588467	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs589508	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs590713	0.85[ASN][1000 genomes]
rs593796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs595299	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595487	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595931	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595976	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596404	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596776	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs599353	0.93[CHB][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap]
rs600259	0.83[ASN][1000 genomes]
rs606204	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608759	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs611389	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs611492	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614722	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615178	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs618602	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61880825	0.89[ASN][1000 genomes]
rs620937	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs627118	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs627748	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628063	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628403	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629968	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630362	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs631520	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs631918	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs633639	1.00[CEU][hapmap]
rs633656	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs633684	0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs634553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs641453	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs643922	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646623	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646783	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs648830	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs653295	0.93[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap];0.81[YRI][hapmap]
rs655292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657139	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659351	0.93[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap];0.87[ASN][1000 genomes]
rs660317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs660790	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs664158	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs665122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs667976	0.85[ASN][1000 genomes]
rs669221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs671278	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677146	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs677212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs678664	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs681011	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs685328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688218	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688490	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693986	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077286	0.93[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs7078695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs7474585	0.87[ASN][1000 genomes]
rs7912050	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs840105	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs840106	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs923907	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs979009	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs677575	ATRNL1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117151000-117178800	Weak transcription	Aorta	Aorta

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