Variant report

Variant	rs2492980
Chromosome Location	chr10:117032385-117032386
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 199 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:197)

rs_ID	r²[population]
rs1010610	0.80[EUR][1000 genomes]
rs10444034	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1071575	0.81[ASN][1000 genomes]
rs10736240	1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787555	0.92[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs10787557	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787558	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787571	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs10787572	0.92[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10885659	0.88[CEU][hapmap]
rs10885662	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10885664	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10885669	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10885671	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs10885672	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10885673	0.88[CEU][hapmap];0.80[CHB][hapmap];0.81[EUR][1000 genomes]
rs10885675	0.91[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs10885676	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs10885677	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10885680	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885681	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885682	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885683	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885687	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885692	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10885696	0.92[CEU][hapmap];0.93[CHB][hapmap]
rs10885700	0.88[ASN][1000 genomes]
rs10885702	0.89[ASN][1000 genomes]
rs10885705	0.87[ASN][1000 genomes]
rs10885706	0.90[ASN][1000 genomes]
rs10885710	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs10885712	0.93[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs10885713	0.93[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs10885714	0.93[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs10885716	0.81[ASN][1000 genomes]
rs10885717	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs10885718	0.80[ASN][1000 genomes]
rs10885719	0.92[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs11197072	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197084	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11197091	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11197093	1.00[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs11197103	0.82[ASN][1000 genomes]
rs11197107	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11197110	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs11197115	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11197122	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs11197126	1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11197127	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs11197139	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197146	0.80[ASN][1000 genomes]
rs11197149	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197150	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197159	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197160	1.00[ASN][1000 genomes]
rs11197162	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197163	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11197165	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11197167	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197168	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11197172	0.94[ASN][1000 genomes]
rs11197180	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11197203	0.89[ASN][1000 genomes]
rs11197222	0.80[ASN][1000 genomes]
rs11517121	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11525277	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11527959	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1158406	0.81[ASN][1000 genomes]
rs1170884	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs12217493	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs12218100	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs12221189	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs12254019	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12357053	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12360503	0.80[ASN][1000 genomes]
rs12573443	0.91[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1264748	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1264756	0.83[EUR][1000 genomes]
rs1264763	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1264765	1.00[CEU][hapmap];0.92[YRI][hapmap];0.86[EUR][1000 genomes]
rs1264768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1264774	1.00[CEU][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap]
rs1264782	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1264783	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1264794	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs1264795	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes]
rs1264796	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.86[EUR][1000 genomes]
rs1264799	0.80[EUR][1000 genomes]
rs1268459	0.81[EUR][1000 genomes]
rs1268460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1268916	0.86[EUR][1000 genomes]
rs1269602	0.81[EUR][1000 genomes]
rs1270442	0.88[CEU][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.84[EUR][1000 genomes]
rs1270654	0.80[EUR][1000 genomes]
rs1389647	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1389648	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs1537685	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1565832	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs1663157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17092908	0.88[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17722681	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1899721	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2050705	0.82[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2050706	0.84[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs2172669	0.82[CEU][hapmap];0.91[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2256046	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[ASN][1000 genomes]
rs2265930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2420075	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420077	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420078	0.83[CEU][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2440313	0.83[EUR][1000 genomes]
rs2453212	0.89[ASN][1000 genomes]
rs2484863	0.85[CHB][hapmap];0.89[ASN][1000 genomes]
rs2485965	0.89[ASN][1000 genomes]
rs2485969	0.87[ASN][1000 genomes]
rs2485970	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2492981	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2901047	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs2901048	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs34938864	1.00[ASN][1000 genomes]
rs35120367	0.80[ASN][1000 genomes]
rs4752724	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs5004584	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs581518	0.89[ASN][1000 genomes]
rs583767	0.81[ASN][1000 genomes]
rs585908	0.89[ASN][1000 genomes]
rs586786	0.80[ASN][1000 genomes]
rs587603	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs588467	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs589508	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs590713	0.81[ASN][1000 genomes]
rs593796	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs595299	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs595487	0.89[ASN][1000 genomes]
rs595931	0.89[ASN][1000 genomes]
rs595976	0.89[ASN][1000 genomes]
rs596404	0.89[ASN][1000 genomes]
rs596776	0.89[ASN][1000 genomes]
rs599353	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs600259	0.80[ASN][1000 genomes]
rs606204	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs608759	0.89[ASN][1000 genomes]
rs611389	0.89[ASN][1000 genomes]
rs611492	0.89[ASN][1000 genomes]
rs614722	0.89[ASN][1000 genomes]
rs615178	0.89[ASN][1000 genomes]
rs618602	0.89[ASN][1000 genomes]
rs61880825	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620937	0.90[ASN][1000 genomes]
rs627118	0.89[ASN][1000 genomes]
rs627748	0.89[ASN][1000 genomes]
rs628063	0.89[ASN][1000 genomes]
rs628403	0.89[ASN][1000 genomes]
rs629968	0.89[ASN][1000 genomes]
rs630362	0.89[ASN][1000 genomes]
rs631520	0.90[ASN][1000 genomes]
rs631918	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs633656	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs633684	0.93[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs634553	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs641453	0.89[ASN][1000 genomes]
rs643922	0.89[ASN][1000 genomes]
rs646623	0.89[ASN][1000 genomes]
rs646783	0.89[ASN][1000 genomes]
rs648830	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs653295	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs655292	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs657139	0.89[ASN][1000 genomes]
rs657545	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs659351	0.92[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs660317	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs660790	0.89[ASN][1000 genomes]
rs664158	0.89[ASN][1000 genomes]
rs665122	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs667976	0.81[ASN][1000 genomes]
rs669221	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs671278	0.89[ASN][1000 genomes]
rs675802	0.89[ASN][1000 genomes]
rs677146	0.87[ASN][1000 genomes]
rs677212	0.89[ASN][1000 genomes]
rs677575	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs678664	0.89[ASN][1000 genomes]
rs681011	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs685328	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs688218	0.89[ASN][1000 genomes]
rs688490	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs688611	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs693986	0.89[ASN][1000 genomes]
rs7077286	0.92[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs7078695	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7474585	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7912050	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs840105	0.88[ASN][1000 genomes]
rs840106	0.88[ASN][1000 genomes]
rs923907	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979009	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv868940	chr10:116933802-117032437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2492980	ATRNL1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116997200-117049800	Weak transcription	Ovary	ovary
2	chr10:117011400-117034400	Weak transcription	Aorta	Aorta
3	chr10:117019000-117034400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:117019000-117034600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:117029000-117033400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:117032200-117032400	ZNF genes & repeats	Fetal Brain Female	brain

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