Variant report

Variant	rs611389
Chromosome Location	chr10:117148260-117148261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117147531..117149211-chr10:117155429..117157411,2	MCF-7	breast:

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs1071575	0.85[ASN][1000 genomes]
rs10736240	0.89[ASN][1000 genomes]
rs10787557	0.87[ASN][1000 genomes]
rs10787558	0.89[ASN][1000 genomes]
rs10787572	0.87[ASN][1000 genomes]
rs10885669	0.83[ASN][1000 genomes]
rs10885672	0.83[ASN][1000 genomes]
rs10885676	0.86[ASN][1000 genomes]
rs10885677	0.89[ASN][1000 genomes]
rs10885680	0.89[ASN][1000 genomes]
rs10885681	0.89[ASN][1000 genomes]
rs10885682	0.89[ASN][1000 genomes]
rs10885683	0.88[ASN][1000 genomes]
rs10885687	0.89[ASN][1000 genomes]
rs10885700	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885702	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885705	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885706	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885712	0.85[ASN][1000 genomes]
rs10885713	0.85[ASN][1000 genomes]
rs10885714	0.85[ASN][1000 genomes]
rs10885715	0.80[ASN][1000 genomes]
rs10885716	0.85[ASN][1000 genomes]
rs10885717	0.85[ASN][1000 genomes]
rs10885718	0.83[ASN][1000 genomes]
rs10885719	0.83[ASN][1000 genomes]
rs11197107	0.83[ASN][1000 genomes]
rs11197126	0.89[ASN][1000 genomes]
rs11197139	0.86[ASN][1000 genomes]
rs11197149	0.89[ASN][1000 genomes]
rs11197150	0.89[ASN][1000 genomes]
rs11197159	0.89[ASN][1000 genomes]
rs11197160	0.89[ASN][1000 genomes]
rs11197168	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197172	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11197180	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197203	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197222	0.83[ASN][1000 genomes]
rs11517121	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11525277	0.89[ASN][1000 genomes]
rs11527959	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1158406	0.85[ASN][1000 genomes]
rs1170884	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12357053	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12358411	0.87[ASN][1000 genomes]
rs1264768	0.83[ASN][1000 genomes]
rs1268460	0.83[ASN][1000 genomes]
rs1389648	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1565832	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17722681	0.86[ASN][1000 genomes]
rs1899721	0.83[ASN][1000 genomes]
rs2050705	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2172669	0.89[ASN][1000 genomes]
rs2256046	0.86[ASN][1000 genomes]
rs2265930	0.86[ASN][1000 genomes]
rs2420075	0.89[ASN][1000 genomes]
rs2420077	0.89[ASN][1000 genomes]
rs2420078	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2453212	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2484863	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485965	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485969	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2485970	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492980	0.89[ASN][1000 genomes]
rs2492981	0.87[ASN][1000 genomes]
rs2901047	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2901048	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34938864	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4752724	0.87[ASN][1000 genomes]
rs5004584	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581518	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs583767	0.85[ASN][1000 genomes]
rs585908	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs586786	0.83[ASN][1000 genomes]
rs589508	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs590713	0.85[ASN][1000 genomes]
rs595299	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595487	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595931	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595976	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596404	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596776	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs600259	0.83[ASN][1000 genomes]
rs606204	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608759	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs611492	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614722	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615178	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs618602	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61880825	0.89[ASN][1000 genomes]
rs620937	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs627118	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs627748	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628063	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628403	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629968	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630362	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs631520	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs631918	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs633656	0.85[ASN][1000 genomes]
rs633684	0.87[ASN][1000 genomes]
rs634553	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs641453	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs643922	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646623	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646783	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs655292	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657139	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657545	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659351	0.87[ASN][1000 genomes]
rs660317	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs660790	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs664158	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs665122	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs667976	0.85[ASN][1000 genomes]
rs669221	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs671278	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675802	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677146	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs677212	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677575	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs678664	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs685328	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688218	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688490	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688611	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693986	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077286	0.83[ASN][1000 genomes]
rs7474585	0.87[ASN][1000 genomes]
rs7912050	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs840105	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs840106	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs923907	0.89[ASN][1000 genomes]
rs979009	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117138200-117150800	Weak transcription	Aorta	Aorta
2	chr10:117147000-117149800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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