Variant report

Variant	rs2420075
Chromosome Location	chr10:117031973-117031974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 172 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:170)

rs_ID	r²[population]
rs1071575	0.81[ASN][1000 genomes]
rs10736240	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787554	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10787555	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10787557	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787558	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787572	0.84[ASN][1000 genomes]
rs10885651	0.82[EUR][1000 genomes]
rs10885655	0.82[EUR][1000 genomes]
rs10885658	0.85[EUR][1000 genomes]
rs10885659	0.83[EUR][1000 genomes]
rs10885660	0.83[EUR][1000 genomes]
rs10885662	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10885664	0.83[EUR][1000 genomes]
rs10885669	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10885671	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10885672	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10885673	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10885675	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10885676	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10885677	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10885680	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885682	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885687	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885700	0.88[ASN][1000 genomes]
rs10885702	0.89[ASN][1000 genomes]
rs10885705	0.87[ASN][1000 genomes]
rs10885706	0.90[ASN][1000 genomes]
rs10885712	0.81[ASN][1000 genomes]
rs10885713	0.81[ASN][1000 genomes]
rs10885714	0.81[ASN][1000 genomes]
rs10885716	0.81[ASN][1000 genomes]
rs10885717	0.81[ASN][1000 genomes]
rs10885718	0.80[ASN][1000 genomes]
rs10885719	0.80[ASN][1000 genomes]
rs11197081	0.84[EUR][1000 genomes]
rs11197084	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197087	0.83[EUR][1000 genomes]
rs11197091	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11197094	0.86[EUR][1000 genomes]
rs11197103	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11197107	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197110	0.88[EUR][1000 genomes]
rs11197122	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11197126	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11197127	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11197139	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197146	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11197149	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197150	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197160	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197168	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197172	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11197180	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11197203	0.89[ASN][1000 genomes]
rs11197222	0.80[ASN][1000 genomes]
rs11517121	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11525277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11527959	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1158406	0.81[ASN][1000 genomes]
rs1170884	0.90[ASN][1000 genomes]
rs12218100	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12355617	0.82[EUR][1000 genomes]
rs12357053	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12360503	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12573443	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1264763	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1264768	0.89[ASN][1000 genomes]
rs1264794	0.85[EUR][1000 genomes]
rs1264802	0.81[EUR][1000 genomes]
rs1268460	0.89[ASN][1000 genomes]
rs1269602	0.91[EUR][1000 genomes]
rs1389648	0.89[ASN][1000 genomes]
rs1537685	0.83[EUR][1000 genomes]
rs1565832	0.89[ASN][1000 genomes]
rs17092908	0.89[EUR][1000 genomes]
rs17722681	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1899718	0.87[EUR][1000 genomes]
rs1899721	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2050705	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2152148	0.82[EUR][1000 genomes]
rs2172669	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2256046	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2265930	0.92[ASN][1000 genomes]
rs2420077	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420078	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2440313	0.93[EUR][1000 genomes]
rs2453212	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2484863	0.89[ASN][1000 genomes]
rs2485965	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2485969	0.87[ASN][1000 genomes]
rs2485970	0.89[ASN][1000 genomes]
rs2492980	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492981	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2901047	0.90[ASN][1000 genomes]
rs2901048	0.90[ASN][1000 genomes]
rs34938864	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35120367	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35728982	0.82[EUR][1000 genomes]
rs4752724	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5004584	0.89[ASN][1000 genomes]
rs581518	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs583767	0.81[ASN][1000 genomes]
rs585908	0.89[ASN][1000 genomes]
rs586786	0.80[ASN][1000 genomes]
rs589508	0.89[ASN][1000 genomes]
rs590713	0.81[ASN][1000 genomes]
rs595299	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs595487	0.89[ASN][1000 genomes]
rs595931	0.89[ASN][1000 genomes]
rs595976	0.89[ASN][1000 genomes]
rs596404	0.89[ASN][1000 genomes]
rs596776	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs600259	0.80[ASN][1000 genomes]
rs606204	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs608759	0.89[ASN][1000 genomes]
rs611389	0.89[ASN][1000 genomes]
rs611492	0.89[ASN][1000 genomes]
rs614722	0.89[ASN][1000 genomes]
rs615178	0.89[ASN][1000 genomes]
rs618602	0.89[ASN][1000 genomes]
rs61880825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620937	0.90[ASN][1000 genomes]
rs627118	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs627748	0.89[ASN][1000 genomes]
rs628063	0.89[ASN][1000 genomes]
rs628403	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs629968	0.89[ASN][1000 genomes]
rs630362	0.89[ASN][1000 genomes]
rs631520	0.90[ASN][1000 genomes]
rs631918	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs633656	0.81[ASN][1000 genomes]
rs633684	0.84[ASN][1000 genomes]
rs634553	0.90[ASN][1000 genomes]
rs641453	0.89[ASN][1000 genomes]
rs643922	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs646623	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs646783	0.89[ASN][1000 genomes]
rs655292	0.89[ASN][1000 genomes]
rs657139	0.89[ASN][1000 genomes]
rs657545	0.89[ASN][1000 genomes]
rs659351	0.84[ASN][1000 genomes]
rs660317	0.87[ASN][1000 genomes]
rs660790	0.89[ASN][1000 genomes]
rs664158	0.89[ASN][1000 genomes]
rs665122	0.86[ASN][1000 genomes]
rs667976	0.81[ASN][1000 genomes]
rs669221	0.90[ASN][1000 genomes]
rs671278	0.89[ASN][1000 genomes]
rs675802	0.89[ASN][1000 genomes]
rs677146	0.87[ASN][1000 genomes]
rs677212	0.89[ASN][1000 genomes]
rs677575	0.89[ASN][1000 genomes]
rs678664	0.89[ASN][1000 genomes]
rs685328	0.89[ASN][1000 genomes]
rs688218	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs688490	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs688611	0.89[ASN][1000 genomes]
rs693986	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7077286	0.80[ASN][1000 genomes]
rs7474585	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7912050	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs840105	0.88[ASN][1000 genomes]
rs840106	0.88[ASN][1000 genomes]
rs923907	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979009	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv868940	chr10:116933802-117032437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116997200-117049800	Weak transcription	Ovary	ovary
2	chr10:117011400-117034400	Weak transcription	Aorta	Aorta
3	chr10:117019000-117034400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:117019000-117034600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:117023400-117032000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:117029000-117033400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:117031800-117032200	Weak transcription	Fetal Brain Female	brain

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