Variant report

Variant	rs11197685
Chromosome Location	chr10:118216863-118216864
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10749215	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10787675	0.86[ASN][1000 genomes]
rs11197692	0.82[AMR][1000 genomes]
rs1431481	0.86[ASN][1000 genomes]
rs1897515	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1897516	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4751970	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7069270	0.92[ASN][1000 genomes]
rs7074313	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs891665	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118202000-118225400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:118202200-118224000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:118212800-118218400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:118214200-118225200	Strong transcription	HMEC	breast
5	chr10:118214800-118217200	Strong transcription	NHEK	skin
6	chr10:118215000-118217000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:118216200-118217200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:118216200-118219200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:118216400-118217000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:118216400-118217400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr10:118216400-118219200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:118216600-118217200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:118216600-118223800	Weak transcription	Pancreas	Pancrea
14	chr10:118216800-118217200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:118216800-118217600	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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