Variant report

Variant	rs11197692
Chromosome Location	chr10:118241245-118241246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10749215	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10749218	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10787675	0.86[ASN][1000 genomes]
rs10885966	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11197685	0.82[AMR][1000 genomes]
rs11197688	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11197691	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1431481	0.86[ASN][1000 genomes]
rs1897515	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1897516	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4751970	0.81[AMR][1000 genomes]
rs7069270	0.80[ASN][1000 genomes]
rs7074313	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs891665	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118238200-118241800	Weak transcription	NHEK	skin
2	chr10:118238600-118249400	Weak transcription	HMEC	breast
3	chr10:118239400-118245800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:118240600-118245200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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