Variant report

Variant	rs11197959
Chromosome Location	chr10:119111721-119111722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:119109550..119117175-chr10:119118758..119125323,7	K562	blood:
2	chr10:119106210..119108096-chr10:119110462..119113410,2	MCF-7	breast:
3	chr10:119111589..119113973-chr10:119122472..119125164,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11197965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197966	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197972	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254737	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263151	0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532812	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs363232	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159176	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159177	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159178	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159179	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119063800-119113200	Weak transcription	Fetal Thymus	thymus
2	chr10:119082400-119118600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:119094000-119113200	Weak transcription	Thymus	Thymus
4	chr10:119095000-119113200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:119095600-119112200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:119095600-119113400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:119096800-119112000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr10:119097000-119112000	Weak transcription	Brain Anterior Caudate	brain
9	chr10:119097000-119114600	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:119099800-119114800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:119100000-119114800	Weak transcription	Fetal Heart	heart
12	chr10:119100200-119131000	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:119101000-119112800	Weak transcription	Dnd41	blood
14	chr10:119102200-119112800	Weak transcription	Primary B cells from cord blood	blood
15	chr10:119102400-119114600	Weak transcription	Spleen	Spleen
16	chr10:119102400-119131400	Weak transcription	Psoas Muscle	Psoas
17	chr10:119102600-119113400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:119102600-119113400	Weak transcription	Brain Angular Gyrus	brain
19	chr10:119102600-119119000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:119102800-119119600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:119102800-119123600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:119105000-119115000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:119105000-119118400	Weak transcription	Ovary	ovary
24	chr10:119105000-119119600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:119105200-119112000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr10:119105200-119113400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr10:119105400-119111800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:119105400-119112000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr10:119105400-119112200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr10:119105400-119113400	Weak transcription	HepG2	liver
31	chr10:119106800-119112200	Weak transcription	Pancreas	Pancrea
32	chr10:119107200-119116200	Weak transcription	Fetal Intestine Small	intestine
33	chr10:119107200-119131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:119108000-119114000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr10:119108200-119114200	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr10:119108400-119112200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr10:119108600-119112200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr10:119108600-119113400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:119108800-119111800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:119108800-119112000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr10:119108800-119113800	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr10:119108800-119114800	Weak transcription	Stomach Mucosa	stomach
43	chr10:119109000-119111800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr10:119109000-119114200	Weak transcription	Colon Smooth Muscle	Colon
45	chr10:119109200-119112000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr10:119109200-119112200	Weak transcription	Left Ventricle	heart
47	chr10:119109200-119113400	Weak transcription	Duodenum Mucosa	Duodenum
48	chr10:119109400-119112400	Weak transcription	Lung	lung
49	chr10:119109400-119130000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:119109800-119113600	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links