Variant report

Variant	rs11197966
Chromosome Location	chr10:119121459-119121460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119109550..119117175-chr10:119118758..119125323,7	K562	blood:
2	chr10:119120696..119122736-chr10:119123763..119126421,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11197959	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197965	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197972	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254737	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263151	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs363232	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159176	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159177	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159178	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159179	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159197	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119100200-119131000	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:119102400-119131400	Weak transcription	Psoas Muscle	Psoas
3	chr10:119102800-119123600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:119107200-119131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:119109400-119130000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:119111000-119124600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:119111800-119129000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:119112600-119123600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:119112600-119132800	Weak transcription	Gastric	stomach
10	chr10:119114000-119123200	Weak transcription	Small Intestine	intestine
11	chr10:119114200-119122600	Weak transcription	Brain Germinal Matrix	brain
12	chr10:119114200-119128200	Weak transcription	Thymus	Thymus
13	chr10:119114800-119123400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr10:119115200-119122000	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:119115200-119122400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:119115200-119122600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:119115200-119122600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:119115200-119122600	Weak transcription	Primary B cells from cord blood	blood
19	chr10:119115200-119123400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:119115200-119126600	Weak transcription	Fetal Thymus	thymus
21	chr10:119115400-119122600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:119115400-119123200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr10:119115600-119122600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr10:119116200-119125000	Weak transcription	Dnd41	blood
25	chr10:119117000-119123600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:119118600-119121600	Enhancers	Fetal Intestine Small	intestine
27	chr10:119119200-119123600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:119119200-119124600	Enhancers	HMEC	breast
29	chr10:119119200-119126000	Weak transcription	Pancreas	Pancrea
30	chr10:119119200-119127200	Enhancers	NHEK	skin
31	chr10:119119400-119122800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:119119400-119123000	Enhancers	HUVEC	blood vessel
33	chr10:119119400-119123600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:119119400-119124000	Enhancers	HSMM	muscle
35	chr10:119119400-119124600	Enhancers	NH-A	brain
36	chr10:119119400-119125400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr10:119119600-119121600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:119119600-119121600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:119119600-119122400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:119119600-119122400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:119119600-119122400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:119119600-119123400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:119119600-119123600	Enhancers	Osteobl	bone
44	chr10:119119600-119124000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:119119600-119124000	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr10:119119600-119124000	Enhancers	NHDF-Ad	bronchial
47	chr10:119119600-119124800	Enhancers	Stomach Mucosa	stomach
48	chr10:119119600-119127200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:119119800-119121800	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr10:119119800-119121800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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