Variant report

Variant	rs11198009
Chromosome Location	chr10:119237775-119237776
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr10:119237663-119238153	MCF10A-Er-Src	breast:	n/a	n/a
2	CTCF	chr10:119237651-119238402	A549	lung:	n/a	chr10:119238014-119238021
3	CTCF	chr10:119237747-119238202	MCF-7	breast:	n/a	chr10:119238014-119238021
4	STAT3	chr10:119237671-119238360	MCF10A-Er-Src	breast:	n/a	chr10:119237858-119237869
5	FOS	chr10:119237485-119238119	MCF10A-Er-Src	breast:	n/a	chr10:119237592-119237600 chr10:119237591-119237602 chr10:119237592-119237600 chr10:119237592-119237599
6	FOS	chr10:119237708-119238090	MCF10A-Er-Src	breast:	n/a	n/a
7	RAD21	chr10:119237651-119238349	HCT-116	colon:	n/a	chr10:119238014-119238023
8	CBX3	chr10:119237415-119238435	HCT-116	colon:	n/a	n/a
9	RAD21	chr10:119237767-119238258	A549	lung:	n/a	chr10:119238014-119238023
10	FOS	chr10:119237662-119238126	MCF10A-Er-Src	breast:	n/a	n/a
11	RAD21	chr10:119237718-119238226	ECC-1	luminal epithelium:	n/a	chr10:119238014-119238023
12	FOS	chr10:119237727-119238094	MCF10A-Er-Src	breast:	n/a	n/a
13	CTCF	chr10:119237760-119237910	GM12867	blood:	n/a	n/a
14	STAT3	chr10:119237623-119238131	MCF10A-Er-Src	breast:	n/a	chr10:119237858-119237869
15	CTCF	chr10:119237767-119238198	A549	lung:	n/a	chr10:119238014-119238021
16	STAT3	chr10:119237636-119238106	MCF10A-Er-Src	breast:	n/a	chr10:119237858-119237869
17	STAT3	chr10:119237623-119238128	MCF10A-Er-Src	breast:	n/a	chr10:119237858-119237869
18	TEAD4	chr10:119237730-119238252	ECC-1	luminal epithelium:	n/a	n/a
19	CTCF	chr10:119237632-119238414	HCT-116	colon:	n/a	chr10:119238014-119238021
20	RAD21	chr10:119237615-119238406	HCT-116	colon:	n/a	chr10:119238014-119238023

No.	Distal block	Cell Line	Cell type
1	chr10:118975861..118976763-chr10:119237489..119238069,2	MCF-7	breast:
2	chr10:119237748..119239316-chr10:119244061..119247001,2	K562	blood:
3	chr10:119202081..119203340-chr10:119237533..119238326,4	MCF-7	breast:

Variant related genes	Relation type
EMX2OS	TF binding region
ENSG00000229847	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11198004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11198007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12218780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096290	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2478970	1.00[EUR][1000 genomes]
rs61865310	1.00[AFR][1000 genomes]
rs7089745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119235200-119238200	Enhancers	Colon Smooth Muscle	Colon
2	chr10:119235600-119238200	Enhancers	Rectal Smooth Muscle	rectum
3	chr10:119235800-119238400	Enhancers	Osteobl	bone
4	chr10:119236600-119238000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr10:119236600-119238400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:119236800-119238000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:119236800-119238400	Enhancers	HSMMtube	muscle
8	chr10:119236800-119238600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:119236800-119238800	Enhancers	NHDF-Ad	bronchial
10	chr10:119237000-119238600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:119237200-119237800	ZNF genes & repeats	HMEC	breast
12	chr10:119237200-119238200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:119237200-119238200	Enhancers	NHEK	skin
14	chr10:119237400-119238200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:119237600-119239800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:119237600-119248600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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