Variant report

Variant	rs2478970
Chromosome Location	chr10:119219548-119219549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119202992..119204778-chr10:119219180..119221584,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11198004	1.00[EUR][1000 genomes]
rs11198007	1.00[EUR][1000 genomes]
rs11198009	1.00[EUR][1000 genomes]
rs12218780	1.00[EUR][1000 genomes]
rs17096290	1.00[EUR][1000 genomes]
rs7089745	1.00[EUR][1000 genomes]
rs7089767	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3452420	chr10:119218961-119219584	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv8746	chr10:119219006-119219667	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119215000-119220600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:119216400-119220400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:119216800-119220400	Weak transcription	Osteobl	bone
4	chr10:119216800-119221200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:119217000-119220400	Weak transcription	HMEC	breast
6	chr10:119217000-119220600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:119217200-119221200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:119217600-119220400	Weak transcription	NHEK	skin
9	chr10:119218000-119220400	Weak transcription	NHDF-Ad	bronchial
10	chr10:119218000-119220600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:119218000-119220600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:119218000-119220800	Weak transcription	Esophagus	oesophagus
13	chr10:119218000-119221000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:119218000-119221200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:119218200-119220600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:119218400-119220600	Weak transcription	A549	lung
17	chr10:119218800-119219800	Weak transcription	Hela-S3	cervix
18	chr10:119218800-119220400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr10:119218800-119220400	Weak transcription	HUVEC	blood vessel
20	chr10:119219200-119219800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:119219200-119219800	Weak transcription	Colon Smooth Muscle	Colon

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