Variant report

Variant	rs11202622
Chromosome Location	chr10:89764937-89764938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10430641	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10788572	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10887765	0.82[AFR][1000 genomes]
rs10887766	0.80[AFR][1000 genomes]
rs10887770	0.82[AFR][1000 genomes]
rs10887773	0.83[AFR][1000 genomes]
rs10887774	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12416244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12769346	0.85[AFR][1000 genomes]
rs2311738	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7908337	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3387188	chr10:89743021-89767378	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89758400-89785800	Weak transcription	Aorta	Aorta
2	chr10:89761800-89766000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:89762400-89765000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:89763200-89765000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:89764000-89765000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:89764000-89765000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:89764000-89765000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:89764000-89765000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:89764000-89765000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:89764000-89765000	Enhancers	NHDF-Ad	bronchial
11	chr10:89764200-89765000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:89764400-89765000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:89764400-89765000	Enhancers	Placenta	Placenta
14	chr10:89764800-89765000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:89764800-89765000	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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