Variant report

Variant	rs10788572
Chromosome Location	chr10:89761696-89761697
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10430641	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10430642	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10887765	0.81[AFR][1000 genomes]
rs10887766	0.85[YRI][hapmap]
rs10887770	0.81[AFR][1000 genomes]
rs10887774	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11202615	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap]
rs11202622	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1234212	0.87[CHB][hapmap]
rs1234213	0.87[CHB][hapmap]
rs1234224	0.87[CHB][hapmap]
rs1234225	0.82[CHB][hapmap]
rs12416244	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1903858	0.87[CHB][hapmap]
rs2248293	0.87[CHB][hapmap]
rs2311738	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2735343	0.87[CHB][hapmap]
rs532678	0.83[CHB][hapmap]
rs7908337	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3387188	chr10:89743021-89767378	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89758400-89785800	Weak transcription	Aorta	Aorta
2	chr10:89761400-89762000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:89761600-89761800	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links