Variant report

Variant	rs1234212
Chromosome Location	chr10:89608892-89608893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10430641	0.87[CHB][hapmap];0.86[CHD][hapmap]
rs10430642	0.86[CHB][hapmap]
rs10788569	0.84[CEU][hapmap];0.89[GIH][hapmap]
rs11202615	0.87[CHB][hapmap];0.86[CHD][hapmap]
rs1234213	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1234216	0.82[EUR][1000 genomes]
rs1234224	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1234225	0.84[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1236816	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1903858	1.00[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.83[LWK][hapmap];0.87[ASN][1000 genomes]
rs2248293	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.87[MEX][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2735343	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs532678	0.81[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs555895	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1234212	FAM35A	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89603800-89610200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:89604000-89610600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:89604200-89609200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:89605000-89610200	Weak transcription	GM12878-XiMat	blood
5	chr10:89605200-89610000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:89605200-89610200	Weak transcription	Fetal Intestine Small	intestine
7	chr10:89606000-89610600	Weak transcription	NHDF-Ad	bronchial
8	chr10:89606200-89610200	Weak transcription	Fetal Intestine Large	intestine
9	chr10:89606200-89610400	Weak transcription	Fetal Heart	heart
10	chr10:89606200-89610600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:89606200-89611200	Enhancers	Hela-S3	cervix
12	chr10:89606400-89610800	Weak transcription	Osteobl	bone
13	chr10:89606800-89609400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:89607200-89609000	Enhancers	A549	lung
15	chr10:89607600-89609200	Enhancers	HMEC	breast
16	chr10:89607800-89609400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:89608000-89610600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:89608400-89609000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:89608600-89609000	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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