Variant report

Variant	rs1234216
Chromosome Location	chr10:89659153-89659154
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1234212	0.82[EUR][1000 genomes]
rs1234213	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1234224	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1234225	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1236816	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1903858	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2248293	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2673803	0.86[AMR][1000 genomes]
rs2735343	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs532678	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs555895	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1035154	chr10:89657150-89676485	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89625600-89663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:89628400-89662000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:89631000-89663400	Weak transcription	Brain Angular Gyrus	brain
4	chr10:89633000-89663400	Weak transcription	Pancreas	Pancrea
5	chr10:89633400-89675800	Weak transcription	Small Intestine	intestine
6	chr10:89636200-89661800	Weak transcription	Brain Anterior Caudate	brain
7	chr10:89641600-89663000	Weak transcription	Esophagus	oesophagus
8	chr10:89646600-89663800	Weak transcription	Fetal Kidney	kidney
9	chr10:89646800-89659400	Strong transcription	Fetal Thymus	thymus
10	chr10:89646800-89663000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:89647000-89667400	Weak transcription	HMEC	breast
12	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:89647200-89662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:89647200-89675400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:89647600-89671800	Weak transcription	HUVEC	blood vessel
16	chr10:89647800-89662000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:89647800-89665600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:89647800-89671000	Weak transcription	A549	lung
19	chr10:89648000-89663000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:89648000-89663000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:89648000-89663000	Weak transcription	Lung	lung
22	chr10:89648000-89663200	Weak transcription	Gastric	stomach
23	chr10:89648000-89663200	Weak transcription	Spleen	Spleen
24	chr10:89648000-89664200	Weak transcription	NH-A	brain
25	chr10:89648000-89683000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:89648200-89662800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:89648200-89663000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr10:89648200-89663200	Weak transcription	Colonic Mucosa	Colon
29	chr10:89648200-89674400	Weak transcription	Right Ventricle	heart
30	chr10:89648400-89662000	Weak transcription	Thymus	Thymus
31	chr10:89648400-89662800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:89648400-89662800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:89648400-89663200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr10:89648400-89663200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:89648400-89663200	Weak transcription	HSMMtube	muscle
36	chr10:89648600-89662000	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr10:89648600-89662800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:89651800-89662800	Weak transcription	Fetal Stomach	stomach
39	chr10:89651800-89672600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr10:89652800-89663000	Weak transcription	Fetal Intestine Large	intestine
41	chr10:89652800-89663200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr10:89653200-89675200	Weak transcription	NHLF	lung
43	chr10:89653400-89662800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:89653400-89671600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr10:89653400-89672600	Weak transcription	NHEK	skin
46	chr10:89654200-89663000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:89654200-89663000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:89654200-89671400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr10:89655000-89672000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:89655400-89663400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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