Variant report

Variant	rs555895
Chromosome Location	chr10:89720907-89720908
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89623108..89624927-chr10:89720086..89724191,3	MCF-7	breast:
2	chr10:89623373..89624894-chr10:89719879..89721616,2	MCF-7	breast:
3	chr10:89620372..89623295-chr10:89720146..89723263,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1234212	0.86[ASN][1000 genomes]
rs1234213	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1234216	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1234224	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1234225	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1236816	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1903858	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2248293	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2673803	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2735343	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs532678	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1794722	chr10:89690827-89725294	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
2	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
3	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
4	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:89683200-89723800	Weak transcription	Psoas Muscle	Psoas
6	chr10:89684000-89725600	Weak transcription	Gastric	stomach
7	chr10:89684000-89726200	Weak transcription	Spleen	Spleen
8	chr10:89687600-89725600	Weak transcription	Right Ventricle	heart
9	chr10:89690200-89725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr10:89692200-89724800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:89696000-89721000	Weak transcription	Brain Angular Gyrus	brain
12	chr10:89696600-89734600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr10:89698800-89725600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:89699000-89729200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:89700200-89723600	Weak transcription	Ovary	ovary
16	chr10:89701200-89725600	Weak transcription	Fetal Heart	heart
17	chr10:89704800-89727000	Weak transcription	Brain Hippocampus Middle	brain
18	chr10:89706200-89723800	Weak transcription	Lung	lung
19	chr10:89708800-89724000	Weak transcription	Left Ventricle	heart
20	chr10:89708800-89734400	Weak transcription	Aorta	Aorta
21	chr10:89709000-89724600	Weak transcription	K562	blood
22	chr10:89709400-89724000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:89711000-89728000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr10:89711200-89726000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr10:89711200-89727000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:89712400-89725800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr10:89712600-89721200	Weak transcription	Brain Anterior Caudate	brain
28	chr10:89712600-89731000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr10:89712800-89721000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr10:89712800-89721000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr10:89713000-89721000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:89713000-89723200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr10:89713000-89725400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:89713000-89728800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr10:89713000-89733200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr10:89713200-89721000	Weak transcription	HMEC	breast
37	chr10:89713200-89721200	Weak transcription	HSMMtube	muscle
38	chr10:89713200-89724800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr10:89713200-89729600	Weak transcription	Fetal Brain Male	brain
40	chr10:89713400-89721000	Weak transcription	Colon Smooth Muscle	Colon
41	chr10:89713400-89721200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:89713800-89721400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr10:89714200-89721000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr10:89714200-89721000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr10:89714600-89721000	Weak transcription	Primary T cells from cord blood	blood
46	chr10:89714600-89723400	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:89714600-89738600	Weak transcription	NHEK	skin
48	chr10:89715600-89721000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:89715600-89721000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:89715600-89721000	Weak transcription	Thymus	Thymus

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