Variant report

Variant	rs1236816
Chromosome Location	chr10:89684214-89684215
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89683604..89685198-chr10:89700673..89703491,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1234212	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1234213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1234216	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1234224	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1234225	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1903858	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2248293	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2673803	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2735343	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs532678	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs555895	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1044043	chr10:89678935-89701069	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:89663600-89686400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:89663600-89687400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
5	chr10:89666000-89712400	Weak transcription	Fetal Brain Male	brain
6	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
7	chr10:89674000-89685600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:89674200-89695200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:89674200-89711000	Weak transcription	HepG2	liver
10	chr10:89674600-89684400	Weak transcription	Fetal Kidney	kidney
11	chr10:89674600-89686400	Weak transcription	HSMMtube	muscle
12	chr10:89674600-89687000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:89674600-89689800	Weak transcription	Fetal Lung	lung
14	chr10:89674600-89695600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
16	chr10:89675400-89686400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:89675600-89685400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:89675600-89686200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:89675600-89687200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:89675600-89705000	Weak transcription	Fetal Stomach	stomach
22	chr10:89675600-89705200	Weak transcription	Esophagus	oesophagus
23	chr10:89676200-89686400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr10:89676600-89685400	Weak transcription	NH-A	brain
25	chr10:89676600-89685400	Weak transcription	Osteobl	bone
26	chr10:89676600-89685600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:89676600-89686200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr10:89676600-89686400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:89676600-89686400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:89676600-89686400	Weak transcription	HMEC	breast
31	chr10:89676600-89686600	Weak transcription	Small Intestine	intestine
32	chr10:89676600-89695400	Weak transcription	Brain Anterior Caudate	brain
33	chr10:89676800-89685400	Weak transcription	K562	blood
34	chr10:89676800-89686400	Weak transcription	NHEK	skin
35	chr10:89676800-89691000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr10:89677000-89686400	Weak transcription	NHLF	lung
37	chr10:89677200-89688200	Weak transcription	A549	lung
38	chr10:89678000-89694200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:89678600-89686400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:89678800-89687000	Weak transcription	Liver	Liver
41	chr10:89679800-89684400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr10:89679800-89691600	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:89680600-89685600	ZNF genes & repeats	GM12878-XiMat	blood
44	chr10:89681000-89687200	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr10:89681200-89686600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:89681400-89686400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:89681600-89689400	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr10:89681800-89685000	Weak transcription	Fetal Heart	heart
49	chr10:89681800-89685400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr10:89681800-89686200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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