Variant report

Variant	rs11202938
Chromosome Location	chr10:90790476-90790477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:90789744..90790664-chr10:90976871..90977665,2	K562	blood:
2	chr10:90789732..90790480-chr10:90976549..90977068,2	MCF-7	breast:
3	chr10:90789343..90790605-chr10:90972311..90973617,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAS-2	chr10:90787438-90793194	NONHSAT015495

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11202942	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12255890	0.80[EUR][1000 genomes]
rs12257967	0.80[EUR][1000 genomes]
rs7081986	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7915047	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9663252	1.00[CEU][hapmap];0.90[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90771800-90808600	Weak transcription	Primary T cells from cord blood	blood
2	chr10:90772400-90795000	Weak transcription	Placenta	Placenta
3	chr10:90772600-90791800	Weak transcription	Esophagus	oesophagus
4	chr10:90772600-90792000	Weak transcription	Colonic Mucosa	Colon
5	chr10:90772600-90795800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:90776600-90792600	Weak transcription	Right Ventricle	heart
7	chr10:90778000-90791200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:90779200-90791600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:90780200-90791400	Weak transcription	Spleen	Spleen
10	chr10:90780400-90790600	Weak transcription	Hela-S3	cervix
11	chr10:90780600-90791000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:90780600-90791800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr10:90780600-90791800	Weak transcription	HSMM	muscle
14	chr10:90780600-90792000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:90780600-90792400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:90780800-90791800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:90780800-90804200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr10:90781000-90790800	Weak transcription	Lung	lung
19	chr10:90781000-90791600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:90781000-90791800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:90781200-90791800	Weak transcription	Fetal Thymus	thymus
22	chr10:90781400-90790600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:90782600-90790600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:90783000-90790600	Weak transcription	HMEC	breast
25	chr10:90783200-90791400	Weak transcription	NHEK	skin
26	chr10:90783200-90791600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:90783400-90791400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:90784400-90791600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr10:90784600-90790600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:90785800-90791400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:90786000-90790600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:90786600-90791800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr10:90788400-90792800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:90788600-90792000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:90788800-90792800	Enhancers	NHDF-Ad	bronchial
36	chr10:90789000-90790600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:90789400-90791200	Enhancers	Primary hematopoietic stem cells	blood
38	chr10:90789400-90792800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:90789400-90793000	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr10:90789400-90793000	Enhancers	Osteobl	bone
41	chr10:90789600-90790600	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr10:90789600-90790800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr10:90789600-90792800	Enhancers	Primary B cells from cord blood	blood
44	chr10:90789800-90790800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:90789800-90790800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr10:90789800-90791400	Weak transcription	Left Ventricle	heart
47	chr10:90789800-90791600	Weak transcription	NH-A	brain
48	chr10:90789800-90791800	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr10:90789800-90791800	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr10:90789800-90792200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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