Variant report

Variant	rs9663252
Chromosome Location	chr10:90824999-90825000
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11202942	0.80[EUR][1000 genomes]
rs11202947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11202949	1.00[EUR][1000 genomes]
rs11202953	0.86[YRI][hapmap]
rs11202997	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244167	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255810	1.00[MEX][hapmap]
rs12255890	0.93[EUR][1000 genomes]
rs12257967	0.93[EUR][1000 genomes]
rs12258103	1.00[EUR][1000 genomes]
rs3218615	1.00[MEX][hapmap]
rs4077998	1.00[MEX][hapmap]
rs7071358	1.00[EUR][1000 genomes]
rs7081986	0.93[EUR][1000 genomes]
rs7088145	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7091591	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74147171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74147181	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74149912	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149913	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149919	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7895496	1.00[MEX][hapmap]
rs7915047	0.93[EUR][1000 genomes]
rs7921400	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv467416	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv551842	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895880	chr10:90816060-90874029	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv831944	chr10:90822654-90967018	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90801400-90829400	Weak transcription	Aorta	Aorta
2	chr10:90803200-90825000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:90807800-90825000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:90822200-90825600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:90822400-90825800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:90823000-90833600	Weak transcription	Ovary	ovary
7	chr10:90823600-90825200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:90823600-90825200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:90823600-90825200	Enhancers	Fetal Stomach	stomach
10	chr10:90823800-90825200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:90824200-90825200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:90824400-90825000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr10:90824400-90825200	Enhancers	NHDF-Ad	bronchial
14	chr10:90824600-90825000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr10:90824600-90825200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:90824800-90825200	Enhancers	Adipose Nuclei	Adipose
17	chr10:90824800-90825200	Enhancers	Fetal Lung	lung
18	chr10:90824800-90825200	Active TSS	Stomach Smooth Muscle	stomach
19	chr10:90824800-90825400	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links