Variant report

Variant	rs7091591
Chromosome Location	chr10:90846506-90846507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11202942	0.80[EUR][1000 genomes]
rs11202947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11202949	1.00[EUR][1000 genomes]
rs11202953	0.82[YRI][hapmap]
rs11202997	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255890	0.93[EUR][1000 genomes]
rs12257967	0.93[EUR][1000 genomes]
rs12258103	1.00[EUR][1000 genomes]
rs7071358	1.00[EUR][1000 genomes]
rs7081986	0.93[EUR][1000 genomes]
rs7088145	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74147171	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74147181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74149912	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149913	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149919	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7915047	0.93[EUR][1000 genomes]
rs9663252	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv467416	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv551842	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895880	chr10:90816060-90874029	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv831944	chr10:90822654-90967018	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv467418	chr10:90826252-90874468	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv551843	chr10:90826252-90874468	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2829934	chr10:90826779-90874468	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv895881	chr10:90842431-90940003	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90841800-90861000	Weak transcription	Aorta	Aorta
2	chr10:90842000-90851600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:90842200-90846600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:90842400-90846600	Weak transcription	Left Ventricle	heart
5	chr10:90843800-90847400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:90844200-90850400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:90844400-90847400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:90844600-90846600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:90844600-90847200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr10:90845000-90846600	Weak transcription	GM12878-XiMat	blood
11	chr10:90845200-90846600	Weak transcription	Psoas Muscle	Psoas
12	chr10:90845200-90850600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:90845200-90855000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr10:90845400-90846600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:90845400-90846600	Weak transcription	Brain Anterior Caudate	brain
16	chr10:90845400-90847000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:90845400-90850000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:90845400-90850600	Weak transcription	Brain Substantia Nigra	brain
19	chr10:90845600-90847000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:90845800-90847200	Enhancers	H9 Cell Line	embryonic stem cell
21	chr10:90845800-90847400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr10:90845800-90847400	Flanking Active TSS	Dnd41	blood
23	chr10:90846000-90846600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:90846000-90846600	Enhancers	Right Atrium	heart
25	chr10:90846000-90846600	Enhancers	HSMM	muscle
26	chr10:90846000-90846800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:90846000-90847000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:90846000-90847200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr10:90846000-90847400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr10:90846000-90847400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr10:90846200-90846600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:90846200-90846600	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr10:90846200-90846600	Enhancers	Hela-S3	cervix
34	chr10:90846200-90846800	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr10:90846200-90846800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:90846200-90846800	Enhancers	Brain Germinal Matrix	brain
37	chr10:90846200-90847000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr10:90846200-90847200	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr10:90846200-90847200	Flanking Active TSS	NHDF-Ad	bronchial
40	chr10:90846200-90847400	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr10:90846200-90847400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:90846200-90847400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:90846200-90847400	Flanking Active TSS	HSMMtube	muscle
44	chr10:90846400-90846600	Enhancers	Brain Angular Gyrus	brain
45	chr10:90846400-90846600	Enhancers	K562	blood
46	chr10:90846400-90846800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:90846400-90847000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr10:90846400-90847200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr10:90846400-90847200	Enhancers	Fetal Muscle Leg	muscle
50	chr10:90846400-90847200	Flanking Active TSS	NHLF	lung

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