Variant report

Variant	rs12255890
Chromosome Location	chr10:90803603-90803604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11202938	0.80[EUR][1000 genomes]
rs11202942	0.86[EUR][1000 genomes]
rs11202947	0.93[EUR][1000 genomes]
rs11202949	0.93[EUR][1000 genomes]
rs12244167	0.93[EUR][1000 genomes]
rs12257967	1.00[EUR][1000 genomes]
rs12258103	0.93[EUR][1000 genomes]
rs7071358	0.93[EUR][1000 genomes]
rs7081986	1.00[EUR][1000 genomes]
rs7088145	0.93[EUR][1000 genomes]
rs7091591	0.93[EUR][1000 genomes]
rs74147171	0.93[EUR][1000 genomes]
rs74147181	0.93[EUR][1000 genomes]
rs7915047	1.00[EUR][1000 genomes]
rs9663252	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90771800-90808600	Weak transcription	Primary T cells from cord blood	blood
2	chr10:90780800-90804200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr10:90792200-90807200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:90792800-90807200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:90792800-90807400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:90792800-90814600	Weak transcription	GM12878-XiMat	blood
7	chr10:90794200-90816800	Weak transcription	Left Ventricle	heart
8	chr10:90795800-90803800	Weak transcription	Right Atrium	heart
9	chr10:90796000-90807000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:90801200-90809400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:90801400-90829400	Weak transcription	Aorta	Aorta
12	chr10:90801800-90804000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:90802600-90804400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:90802600-90806800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:90802600-90815000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:90803200-90807000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:90803200-90813200	Weak transcription	Ovary	ovary
18	chr10:90803200-90825000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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