Variant report

Variant	rs74147181
Chromosome Location	chr10:90840380-90840381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11202942	0.80[EUR][1000 genomes]
rs11202947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11202949	1.00[EUR][1000 genomes]
rs11202997	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255890	0.93[EUR][1000 genomes]
rs12257967	0.93[EUR][1000 genomes]
rs12258103	1.00[EUR][1000 genomes]
rs7071358	1.00[EUR][1000 genomes]
rs7081986	0.93[EUR][1000 genomes]
rs7088145	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7091591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74147171	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74149912	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149913	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149919	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7915047	0.93[EUR][1000 genomes]
rs9663252	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv467416	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv551842	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895880	chr10:90816060-90874029	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv831944	chr10:90822654-90967018	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv467418	chr10:90826252-90874468	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv551843	chr10:90826252-90874468	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2829934	chr10:90826779-90874468	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90830400-90841800	Weak transcription	Left Ventricle	heart
2	chr10:90836800-90840600	Enhancers	NHDF-Ad	bronchial
3	chr10:90837400-90840600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:90837400-90843000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:90837600-90841000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:90837800-90844000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:90838000-90840600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:90838200-90840600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:90838200-90840800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr10:90838400-90840600	Enhancers	NHLF	lung
11	chr10:90838600-90840800	Enhancers	K562	blood
12	chr10:90839200-90841000	Enhancers	HUVEC	blood vessel
13	chr10:90839200-90843000	Weak transcription	GM12878-XiMat	blood
14	chr10:90839200-90843600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:90839200-90844600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:90839600-90844000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:90839600-90844600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:90839800-90841000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr10:90840000-90840400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:90840000-90840600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:90840000-90840600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:90840000-90840600	Enhancers	HMEC	breast
23	chr10:90840200-90840400	Enhancers	Psoas Muscle	Psoas
24	chr10:90840200-90841400	Weak transcription	HSMMtube	muscle
25	chr10:90840200-90841800	Weak transcription	Small Intestine	intestine
26	chr10:90840200-90846000	Weak transcription	Adipose Nuclei	Adipose

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