Variant report

Variant	rs11204715
Chromosome Location	chr1:150696091-150696092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr1:150696081-150696372	K562	blood:	n/a	n/a
2	GATA3	chr1:150696070-150696210	SH-SY5Y	brain:	n/a	n/a

Variant related genes	Relation type
HORMAD1	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10788795	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10888396	0.84[EUR][1000 genomes]
rs11204689	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11204700	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11204714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11204727	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11576175	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12031458	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12032445	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12038403	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12728254	0.88[EUR][1000 genomes]
rs16840074	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1811698	0.83[ASN][1000 genomes]
rs1932864	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2134688	0.88[EUR][1000 genomes]
rs3738483	0.88[EUR][1000 genomes]
rs3754207	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3768017	0.88[EUR][1000 genomes]
rs3820541	0.85[EUR][1000 genomes]
rs3820543	0.88[EUR][1000 genomes]
rs4379678	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4970970	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55890313	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61817598	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61817599	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61817600	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6587515	0.80[EUR][1000 genomes]
rs6587517	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6661100	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6671703	0.85[EUR][1000 genomes]
rs6679701	0.80[EUR][1000 genomes]
rs6684611	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6692277	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6696167	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72704624	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7517	0.80[EUR][1000 genomes]
rs7517566	0.85[EUR][1000 genomes]
rs7520511	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7520516	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7529204	0.85[EUR][1000 genomes]
rs7535975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv872417	chr1:150618632-150759979	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150670600-150702600	Weak transcription	Hela-S3	cervix
2	chr1:150679200-150698600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr1:150681600-150702600	Weak transcription	A549	lung
4	chr1:150690800-150702400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr1:150695000-150702600	Weak transcription	Primary B cells from cord blood	blood
6	chr1:150695200-150702800	Weak transcription	Rectal Mucosa Donor 31	rectum

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