Variant report

Variant	rs61817600
Chromosome Location	chr1:150706794-150706795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10788795	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10888396	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11204689	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11204700	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11204714	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11204715	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11204727	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11576175	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12031458	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12032445	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12038403	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12728254	0.91[EUR][1000 genomes]
rs16840074	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1811698	0.87[ASN][1000 genomes]
rs1932864	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2134688	0.91[EUR][1000 genomes]
rs3738483	0.91[EUR][1000 genomes]
rs3754207	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3768017	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3820541	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3820543	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4379678	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4970970	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs533928	0.80[EUR][1000 genomes]
rs55890313	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61817598	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61817599	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61817649	0.80[EUR][1000 genomes]
rs6587517	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6661100	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6671703	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6679701	0.83[EUR][1000 genomes]
rs6684611	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6688248	0.80[EUR][1000 genomes]
rs6692277	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6696167	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72704624	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7517566	0.88[EUR][1000 genomes]
rs7520511	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7520516	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7529204	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7535848	0.80[EUR][1000 genomes]
rs7535975	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv872417	chr1:150618632-150759979	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv872419	chr1:150699199-150738759	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150701400-150707600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:150701400-150708000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:150701400-150710000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr1:150701400-150727400	Weak transcription	Left Ventricle	heart
5	chr1:150701800-150710400	Weak transcription	Adipose Nuclei	Adipose
6	chr1:150702400-150707600	Weak transcription	Liver	Liver
7	chr1:150702400-150716200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr1:150702600-150715800	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr1:150702600-150716200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr1:150702600-150716200	Strong transcription	Primary B cells from cord blood	blood
11	chr1:150702600-150716200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr1:150702800-150716200	Strong transcription	Primary B cells from peripheral blood	blood
13	chr1:150703200-150709000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:150703200-150713200	Weak transcription	Fetal Intestine Small	intestine
15	chr1:150703800-150717200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr1:150704000-150711600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr1:150704000-150715800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr1:150704000-150716200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:150704000-150716200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:150704000-150736600	Weak transcription	Fetal Stomach	stomach
21	chr1:150704200-150716200	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr1:150704400-150708200	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr1:150704400-150716200	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr1:150704400-150716200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr1:150704400-150716200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:150704400-150716200	Strong transcription	Duodenum Mucosa	Duodenum
27	chr1:150704400-150716200	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr1:150704600-150715800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr1:150704600-150717400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr1:150704800-150709600	Weak transcription	Lung	lung
31	chr1:150704800-150715000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr1:150704800-150715200	Weak transcription	Small Intestine	intestine
33	chr1:150705400-150723800	Weak transcription	Gastric	stomach
34	chr1:150705600-150723800	Weak transcription	Thymus	Thymus
35	chr1:150705800-150709600	Weak transcription	Fetal Thymus	thymus
36	chr1:150706000-150707000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr1:150706000-150710200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr1:150706000-150712200	Weak transcription	Colonic Mucosa	Colon
39	chr1:150706200-150709800	Weak transcription	GM12878-XiMat	blood
40	chr1:150706600-150707200	Weak transcription	Primary T cells from cord blood	blood
41	chr1:150706600-150707600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr1:150706600-150708200	Strong transcription	Spleen	Spleen
43	chr1:150706600-150710400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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