Variant report

Variant	rs533928
Chromosome Location	chr1:150884271-150884272
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150883932..150886326-chr1:150890784..150892342,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10788795	0.80[EUR][1000 genomes]
rs10888396	0.84[EUR][1000 genomes]
rs11204727	0.92[CEU][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs11576175	0.92[CEU][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs11579289	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12040707	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12042263	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12044969	0.85[ASN][1000 genomes]
rs12728254	0.88[EUR][1000 genomes]
rs16832604	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2134688	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs2305812	0.93[CHB][hapmap];0.82[ASN][1000 genomes]
rs2305815	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs267724	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs267736	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34090972	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3738483	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs3754210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3768017	0.88[EUR][1000 genomes]
rs3820541	0.92[CEU][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes]
rs3820543	0.88[EUR][1000 genomes]
rs4379678	0.92[CEU][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs539118	0.84[ASN][1000 genomes]
rs61817600	0.80[EUR][1000 genomes]
rs61817649	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6661100	0.80[EUR][1000 genomes]
rs6671489	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6671703	0.85[EUR][1000 genomes]
rs6679701	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6688248	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6692277	0.80[EUR][1000 genomes]
rs6696167	0.80[EUR][1000 genomes]
rs72704624	0.80[EUR][1000 genomes]
rs72706512	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7517566	1.00[CEU][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7521445	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7529204	0.91[EUR][1000 genomes]
rs7535032	0.91[ASN][1000 genomes]
rs7535848	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs771203	0.84[ASN][1000 genomes]
rs771204	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs771205	0.93[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv1008496	chr1:150845827-150970656	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv947130	chr1:150878115-150899504	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150879200-150898200	Weak transcription	Placenta Amnion	Placenta Amnion

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