Variant report

Variant	rs7535848
Chromosome Location	chr1:150877681-150877682
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150877283..150879552-chr1:150896139..150898336,2	MCF-7	breast:
2	chr1:150849390..150851277-chr1:150877417..150879109,2	MCF-7	breast:
3	chr1:150877469..150879238-chr1:150945811..150948116,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143418	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10788795	0.80[EUR][1000 genomes]
rs10888396	0.84[EUR][1000 genomes]
rs11204727	0.80[EUR][1000 genomes]
rs11576175	0.80[EUR][1000 genomes]
rs11579289	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12040707	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12042263	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12044969	0.87[ASN][1000 genomes]
rs12728254	0.88[EUR][1000 genomes]
rs16832604	0.89[ASN][1000 genomes]
rs2134688	0.88[EUR][1000 genomes]
rs2305812	0.84[ASN][1000 genomes]
rs2305815	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs267724	0.86[ASN][1000 genomes]
rs267736	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34090972	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3738483	0.88[EUR][1000 genomes]
rs3754210	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3768017	0.88[EUR][1000 genomes]
rs3820541	0.91[EUR][1000 genomes]
rs3820543	0.88[EUR][1000 genomes]
rs4379678	0.88[EUR][1000 genomes]
rs533928	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs539118	0.86[ASN][1000 genomes]
rs61817600	0.80[EUR][1000 genomes]
rs61817649	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6661100	0.80[EUR][1000 genomes]
rs6671489	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6671703	0.85[EUR][1000 genomes]
rs6679701	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6688248	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6692277	0.80[EUR][1000 genomes]
rs6696167	0.80[EUR][1000 genomes]
rs72704624	0.80[EUR][1000 genomes]
rs72706512	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7517566	0.91[EUR][1000 genomes]
rs7521445	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7529204	0.91[EUR][1000 genomes]
rs7535032	0.86[ASN][1000 genomes]
rs771203	0.86[ASN][1000 genomes]
rs771204	0.86[ASN][1000 genomes]
rs771205	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv2810	chr1:150835173-150879869	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1008496	chr1:150845827-150970656	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
6	nsv946385	chr1:150875504-150878115	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150875400-150879000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:150876600-150877800	Weak transcription	Placenta	Placenta

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