The 2.0 version of rSNPBase

Variant report

Variant rs539118
Chromosome Location chr1:150966197-150966198
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150952000-150968000 Weak transcription Spleen Spleen
2 chr1:150952600-150968000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr1:150954200-150969400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr1:150954800-150968000 Weak transcription Fetal Kidney kidney
5 chr1:150955000-150969400 Weak transcription Primary hematopoietic stem cells short term culture blood
6 chr1:150955400-150969400 Weak transcription Gastric stomach
7 chr1:150955400-150970400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:150955400-150978800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr1:150955600-150967600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
10 chr1:150955600-150968200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr1:150955800-150967600 Weak transcription Fetal Intestine Small intestine
12 chr1:150956200-150969400 Weak transcription Fetal Intestine Large intestine
13 chr1:150957800-150967600 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr1:150958000-150967600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:150958400-150967600 Weak transcription Fetal Adrenal Gland Adrenal Gland
16 chr1:150959000-150969400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr1:150959200-150968000 Weak transcription HepG2 liver
18 chr1:150959400-150967600 Weak transcription Pancreas Pancrea
19 chr1:150960600-150967600 Weak transcription Duodenum Mucosa Duodenum
20 chr1:150961000-150969400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr1:150961200-150966600 Weak transcription Primary neutrophils fromperipheralblood blood
22 chr1:150961200-150967400 Weak transcription Primary T cells from cord blood blood
23 chr1:150961200-150967600 Weak transcription Primary T helper naive cells fromperipheralblood blood
24 chr1:150961200-150968200 Weak transcription Primary T cells fromperipheralblood blood
25 chr1:150961400-150966600 Weak transcription Liver Liver
26 chr1:150961400-150968200 Weak transcription Primary T killer naive cells fromperipheralblood blood
27 chr1:150961400-150969400 Weak transcription Colonic Mucosa Colon
28 chr1:150961400-150969600 Weak transcription Pancreatic Islets Pancreatic Islet
29 chr1:150961600-150969400 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr1:150961800-150978200 Weak transcription H9 Cell Line embryonic stem cell
31 chr1:150962800-150967800 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr1:150962800-150968200 Weak transcription Stomach Smooth Muscle stomach
33 chr1:150963200-150967600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr1:150963400-150969400 Weak transcription Esophagus oesophagus
35 chr1:150963800-150969600 Weak transcription Placenta Amnion Placenta Amnion
36 chr1:150964000-150968200 Weak transcription iPS-15b Cell Line embryonic stem cell
37 chr1:150964400-150967000 Weak transcription Monocytes-CD14+_RO01746 blood
38 chr1:150964400-150969400 Weak transcription Lung lung
39 chr1:150964800-150967800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr1:150965000-150967600 Weak transcription Fetal Stomach stomach
41 chr1:150965200-150967600 Weak transcription Primary monocytes fromperipheralblood blood
42 chr1:150965200-150967600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr1:150965200-150968000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:150965400-150967800 Weak transcription Brain Inferior Temporal Lobe brain
45 chr1:150965400-150968000 Weak transcription Brain Anterior Caudate brain
46 chr1:150965600-150966400 Weak transcription K562 blood
47 chr1:150965600-150967600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
48 chr1:150965600-150967800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr1:150965600-150968000 Weak transcription Brain Cingulate Gyrus brain
50 chr1:150965600-150968000 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015