Variant report

Variant	rs11207296
Chromosome Location	chr1:59165042-59165043
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:59158510..59160600-chr1:59164102..59165657,2	MCF-7	breast:
2	chr1:59163941..59165511-chr1:59183952..59186205,2	K562	blood:
3	chr1:59152149..59156069-chr1:59161646..59166160,4	K562	blood:
4	chr1:59152225..59156137-chr1:59164048..59166851,4	MCF-7	breast:
5	chr1:59165034..59165710-chr5:40687487..40687987,2	Hela-S3	cervix:
6	chr1:59162606..59168890-chr1:59243728..59252069,16	K562	blood:
7	chr1:59155488..59157004-chr1:59164254..59165910,2	MCF-7	breast:
8	chr1:59163564..59170812-chr1:59245390..59251956,13	K562	blood:
9	chr1:59162282..59165513-chr1:59247637..59250778,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000177606	Chromatin interaction
ENSG00000234807	Chromatin interaction
ENSG00000162601	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10430103	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10889108	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10889109	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11207277	0.93[ASN][1000 genomes]
rs11207283	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11207285	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11207294	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11207295	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026075	0.93[ASN][1000 genomes]
rs12026540	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12030835	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12036041	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12036189	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12042828	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12043657	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12132702	0.91[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12136988	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12403199	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1569705	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17372910	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1982874	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2172365	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61778512	0.83[EUR][1000 genomes]
rs6662022	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6666454	0.91[ASN][1000 genomes]
rs6667106	0.83[EUR][1000 genomes]
rs6676992	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6683627	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6701474	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7519751	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7523134	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7525365	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7527235	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59164000-59165200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:59164000-59165800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:59164000-59165800	Active TSS	GM12878-XiMat	blood
4	chr1:59164000-59166200	Active TSS	Psoas Muscle	Psoas
5	chr1:59164200-59165200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:59164200-59165200	Flanking Active TSS	Brain Anterior Caudate	brain
7	chr1:59164200-59165200	Flanking Active TSS	Stomach Smooth Muscle	stomach
8	chr1:59164200-59165200	Flanking Active TSS	Dnd41	blood
9	chr1:59164200-59165400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr1:59164200-59165400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr1:59164200-59165400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr1:59164200-59165600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
13	chr1:59164200-59165600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:59164200-59165800	Active TSS	H9 Cell Line	embryonic stem cell
15	chr1:59164200-59165800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:59164200-59165800	Active TSS	NHDF-Ad	bronchial
17	chr1:59164400-59165200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:59164400-59165200	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr1:59164400-59165200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr1:59164400-59165200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr1:59164400-59165200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr1:59164400-59165200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr1:59164400-59165200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:59164400-59165200	Flanking Active TSS	Brain Angular Gyrus	brain
25	chr1:59164400-59165200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
26	chr1:59164400-59165200	Flanking Active TSS	Colon Smooth Muscle	Colon
27	chr1:59164400-59165200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr1:59164400-59165200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
29	chr1:59164400-59165200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr1:59164400-59165200	Flanking Active TSS	HUVEC	blood vessel
31	chr1:59164400-59165200	Flanking Active TSS	NH-A	brain
32	chr1:59164400-59165200	Flanking Active TSS	Osteobl	bone
33	chr1:59164400-59165400	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr1:59164400-59165400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr1:59164400-59165400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:59164400-59165400	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr1:59164400-59165400	Flanking Active TSS	Rectal Smooth Muscle	rectum
38	chr1:59164400-59165800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr1:59164400-59165800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr1:59164400-59166000	Active TSS	NHLF	lung
41	chr1:59164400-59166200	Active TSS	Ovary	ovary
42	chr1:59164400-59166200	Active TSS	Right Atrium	heart
43	chr1:59164600-59165200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr1:59164600-59165200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr1:59164600-59165200	Flanking Active TSS	Brain Substantia Nigra	brain
46	chr1:59164600-59165200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr1:59164600-59165200	Flanking Active TSS	Fetal Heart	heart
48	chr1:59164600-59165200	Flanking Active TSS	Fetal Lung	lung
49	chr1:59164600-59165200	Flanking Active TSS	Thymus	Thymus
50	chr1:59164600-59165400	Flanking Active TSS	Primary T cells fromperipheralblood	blood

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