Variant report

Variant	rs12026540
Chromosome Location	chr1:59178628-59178629
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59161079..59162975-chr1:59176846..59178891,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10430103	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10889108	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10889109	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10889116	0.81[EUR][1000 genomes]
rs11207277	0.91[ASN][1000 genomes]
rs11207283	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11207285	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11207294	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11207295	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11207296	0.91[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12026075	0.91[ASN][1000 genomes]
rs12030835	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12036041	0.91[ASN][1000 genomes]
rs12036189	0.84[ASN][1000 genomes]
rs12042828	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12043657	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12132702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12136988	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12403199	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1569705	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17372910	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1969772	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs1982874	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2172365	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2811872	0.81[EUR][1000 genomes]
rs61778512	0.87[EUR][1000 genomes]
rs6662022	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6666454	0.88[ASN][1000 genomes]
rs6667106	0.87[EUR][1000 genomes]
rs6676992	0.91[ASN][1000 genomes]
rs6683627	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6701474	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs7519751	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7523134	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7525365	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7527235	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59166400-59186200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:59176000-59182800	Weak transcription	HUVEC	blood vessel
3	chr1:59176200-59183200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:59176600-59183800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:59176800-59188800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:59177200-59179800	Weak transcription	Fetal Brain Male	brain
7	chr1:59177200-59180400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:59177200-59180400	Weak transcription	HepG2	liver
9	chr1:59177400-59184000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr1:59178000-59178800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:59178600-59178800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:59178600-59179800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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