The 2.0 version of rSNPBase

Variant report

Variant rs11207943
Chromosome Location chr1:62707446-62707447
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62701000-62710800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
2 chr1:62701400-62709400 Weak transcription Fetal Intestine Small intestine
3 chr1:62704000-62710600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
4 chr1:62704000-62711400 Weak transcription Placenta Amnion Placenta Amnion
5 chr1:62704000-62720600 Weak transcription Right Atrium heart
6 chr1:62704200-62711600 Weak transcription Adipose Nuclei Adipose
7 chr1:62704200-62712000 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr1:62704400-62713200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr1:62706000-62708800 Enhancers Fetal Stomach stomach
10 chr1:62706400-62707800 Genic enhancers Breast Myoepithelial Primary Cells Breast
11 chr1:62706400-62707800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr1:62706400-62707800 Enhancers Fetal Muscle Trunk muscle
13 chr1:62706400-62708000 Enhancers Fetal Muscle Leg muscle
14 chr1:62706400-62708400 Enhancers Placenta Placenta
15 chr1:62706400-62713200 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr1:62706600-62707600 Enhancers HSMM muscle
17 chr1:62706600-62707800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr1:62706600-62707800 Enhancers Fetal Lung lung
19 chr1:62706600-62708000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
20 chr1:62706600-62708000 Enhancers Fetal Heart heart
21 chr1:62706800-62707600 Enhancers Fetal Thymus thymus
22 chr1:62706800-62707600 Enhancers Right Ventricle heart
23 chr1:62706800-62707800 Enhancers Colon Smooth Muscle Colon
24 chr1:62706800-62707800 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
25 chr1:62706800-62707800 Enhancers Left Ventricle heart
26 chr1:62706800-62707800 Enhancers Pancreas Pancrea
27 chr1:62706800-62707800 Enhancers HSMMtube muscle
28 chr1:62706800-62708000 Enhancers Liver Liver
29 chr1:62706800-62708000 Flanking Active TSS HepG2 liver
30 chr1:62707000-62707600 Enhancers Fetal Kidney kidney
31 chr1:62707000-62707600 Enhancers Gastric stomach
32 chr1:62707000-62707600 Enhancers Lung lung
33 chr1:62707000-62707800 Enhancers Colonic Mucosa Colon
34 chr1:62707000-62707800 Enhancers Fetal Intestine Large intestine
35 chr1:62707200-62707600 Enhancers Duodenum Smooth Muscle Duodenum
36 chr1:62707200-62710600 Weak transcription HMEC breast
37 chr1:62707200-62710800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr1:62707400-62707600 Flanking Active TSS A549 lung
39 chr1:62707400-62707600 Flanking Active TSS Hela-S3 cervix
40 chr1:62707400-62707800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
41 chr1:62707400-62707800 Enhancers Cortex derived primary cultured neurospheres brain
42 chr1:62707400-62707800 Enhancers Brain Substantia Nigra brain
43 chr1:62707400-62707800 Enhancers Esophagus oesophagus

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Last update: Aug 31, 2015