Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1050334	0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10789108	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs10889309	0.83[ASN][1000 genomes]
rs10889313	0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs10889315	0.82[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs11207941	0.85[ASN][1000 genomes]
rs11207943	0.83[ASN][1000 genomes]
rs11207944	0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs11207945	0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs11207946	0.83[ASN][1000 genomes]
rs11207947	0.96[ASN][1000 genomes]
rs11207948	0.95[ASN][1000 genomes]
rs12089897	0.83[ASN][1000 genomes]
rs12096118	0.96[ASN][1000 genomes]
rs12120789	0.85[ASN][1000 genomes]
rs12138777	0.81[ASN][1000 genomes]
rs12144282	0.85[ASN][1000 genomes]
rs2067994	0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2774928	0.83[ASN][1000 genomes]
rs41289438	0.85[ASN][1000 genomes]
rs4322258	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs55673263	0.92[ASN][1000 genomes]
rs56318037	0.91[ASN][1000 genomes]
rs61775734	0.85[ASN][1000 genomes]
rs61775736	0.85[ASN][1000 genomes]
rs61775737	0.85[ASN][1000 genomes]
rs6660963	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs6664672	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs6680953	0.85[ASN][1000 genomes]
rs6688986	0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs6696307	0.83[ASN][1000 genomes]
rs6696486	0.85[ASN][1000 genomes]
rs7553446	0.85[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004446	chr1:62394631-62813533	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv534984	chr1:62394631-62813533	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1009398	chr1:62656660-62780644	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62704000-62720600	Weak transcription	Right Atrium	heart
2	chr1:62707600-62719600	Weak transcription	Fetal Kidney	kidney
3	chr1:62707600-62732000	Weak transcription	Gastric	stomach
4	chr1:62707800-62727400	Weak transcription	Pancreas	Pancrea
5	chr1:62708200-62720000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:62710800-62731800	Weak transcription	Fetal Intestine Small	intestine
7	chr1:62711600-62730600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:62711600-62737200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:62712000-62727400	Weak transcription	Fetal Lung	lung
10	chr1:62712000-62731600	Weak transcription	Placenta	Placenta
11	chr1:62713400-62728800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:62716200-62719600	Strong transcription	Fetal Stomach	stomach
13	chr1:62716400-62720200	Strong transcription	Placenta Amnion	Placenta Amnion
14	chr1:62718000-62719600	Strong transcription	HepG2	liver
15	chr1:62718800-62728800	Weak transcription	Adipose Nuclei	Adipose
16	chr1:62719000-62726400	Weak transcription	Fetal Muscle Leg	muscle
17	chr1:62719200-62723800	Weak transcription	Fetal Muscle Trunk	muscle

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