Variant report

Variant	rs11208054
Chromosome Location	chr1:63344660-63344661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10493328	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs10493329	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs10789127	0.86[EUR][1000 genomes]
rs10789128	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10889377	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10889378	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10889379	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs10889380	0.84[EUR][1000 genomes]
rs10889381	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs11208029	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs11208030	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs11208031	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs11208033	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs11208034	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11208039	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11208041	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs11208042	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs11208044	0.90[EUR][1000 genomes]
rs11208048	0.94[EUR][1000 genomes]
rs11208055	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12061691	0.97[EUR][1000 genomes]
rs12066108	0.97[EUR][1000 genomes]
rs12066524	0.90[EUR][1000 genomes]
rs12067646	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs12080049	0.81[EUR][1000 genomes]
rs12084633	0.81[EUR][1000 genomes]
rs12085401	0.90[EUR][1000 genomes]
rs12087034	0.89[EUR][1000 genomes]
rs12090494	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs12097658	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs12116959	0.81[EUR][1000 genomes]
rs12121207	0.81[EUR][1000 genomes]
rs12122041	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12125325	0.84[EUR][1000 genomes]
rs12125986	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12135672	0.90[EUR][1000 genomes]
rs12136636	0.97[EUR][1000 genomes]
rs17123817	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs17123830	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs17123896	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs17123899	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs17316198	1.00[ASN][1000 genomes]
rs17388170	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs1927484	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs1927485	0.86[EUR][1000 genomes]
rs1927486	0.86[EUR][1000 genomes]
rs2803244	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737891	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4370785	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs4409690	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs4457613	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs55835075	0.86[EUR][1000 genomes]
rs55936326	0.81[EUR][1000 genomes]
rs55954926	0.90[EUR][1000 genomes]
rs56280875	0.81[EUR][1000 genomes]
rs56329995	0.81[EUR][1000 genomes]
rs57653096	0.81[EUR][1000 genomes]
rs58583743	0.84[EUR][1000 genomes]
rs59317258	0.81[EUR][1000 genomes]
rs61765883	0.81[EUR][1000 genomes]
rs6587988	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs6658682	0.81[EUR][1000 genomes]
rs7513999	0.81[EUR][1000 genomes]
rs7546879	0.81[EUR][1000 genomes]
rs943696	0.93[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830015	chr1:63261143-63455296	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11208054	DOCK7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63298400-63345800	Weak transcription	Left Ventricle	heart
2	chr1:63342400-63347000	Weak transcription	Brain Germinal Matrix	brain
3	chr1:63343000-63347000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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