The 2.0 version of rSNPBase

Variant report

Variant rs55954926
Chromosome Location chr1:63316517-63316518
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:63250800-63319000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:63251000-63317800 Weak transcription Fetal Adrenal Gland Adrenal Gland
3 chr1:63251000-63327400 Weak transcription Fetal Stomach stomach
4 chr1:63251200-63327400 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr1:63261600-63326400 Weak transcription Placenta Placenta
6 chr1:63267200-63327000 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr1:63267200-63327400 Weak transcription Colon Smooth Muscle Colon
8 chr1:63268600-63319600 Weak transcription Liver Liver
9 chr1:63268800-63317600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr1:63269200-63317400 Weak transcription Dnd41 blood
11 chr1:63270400-63331400 Weak transcription Primary T regulatory cells fromperipheralblood blood
12 chr1:63271400-63324400 Weak transcription Pancreas Pancrea
13 chr1:63271600-63326800 Weak transcription Aorta Aorta
14 chr1:63271600-63327400 Weak transcription Thymus Thymus
15 chr1:63271800-63324000 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr1:63273600-63322400 Weak transcription Ovary ovary
17 chr1:63273800-63329000 Weak transcription Brain Cingulate Gyrus brain
18 chr1:63275000-63321400 Weak transcription Fetal Intestine Small intestine
19 chr1:63276000-63322800 Weak transcription H1 Cell Line embryonic stem cell
20 chr1:63276400-63322600 Weak transcription Primary T helper cells PMA-I stimulated --
21 chr1:63276600-63323200 Weak transcription Primary T cells fromperipheralblood blood
22 chr1:63276600-63324400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
23 chr1:63276800-63322000 Weak transcription Fetal Muscle Trunk muscle
24 chr1:63276800-63331400 Weak transcription Fetal Lung lung
25 chr1:63277600-63320600 Weak transcription Right Ventricle heart
26 chr1:63277600-63327600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr1:63278200-63325000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr1:63278400-63322400 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr1:63283800-63324000 Weak transcription K562 blood
30 chr1:63287800-63327400 Weak transcription Lung lung
31 chr1:63288000-63317600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:63288800-63319400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
33 chr1:63289400-63317600 Weak transcription Brain Inferior Temporal Lobe brain
34 chr1:63293400-63317200 Weak transcription HUVEC blood vessel
35 chr1:63293400-63319200 Weak transcription Psoas Muscle Psoas
36 chr1:63293800-63324000 Weak transcription Brain Anterior Caudate brain
37 chr1:63294600-63324000 Weak transcription Primary T helper naive cells from peripheral blood blood
38 chr1:63297600-63320400 Weak transcription Brain Hippocampus Middle brain
39 chr1:63298200-63328600 Weak transcription Primary T helper cells fromperipheralblood blood
40 chr1:63298400-63317000 Weak transcription Adipose Nuclei Adipose
41 chr1:63298400-63319600 Weak transcription Fetal Thymus thymus
42 chr1:63298400-63328000 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr1:63298400-63345800 Weak transcription Left Ventricle heart
44 chr1:63300000-63319400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr1:63300600-63327200 Weak transcription HUES48 Cell Line embryonic stem cell
46 chr1:63300800-63319000 Weak transcription Fetal Kidney kidney
47 chr1:63301200-63323800 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr1:63301600-63317600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr1:63302200-63328400 Weak transcription Fetal Brain Male brain
50 chr1:63302600-63324000 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015