Variant report

Variant	rs12131553
Chromosome Location	chr1:63210279-63210280
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:63201014..63202931-chr1:63208124..63210930,2	MCF-7	breast:
2	chr1:62996236..62997976-chr1:63209600..63212359,2	K562	blood:

Variant related genes	Relation type
ENSG00000270549	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10493328	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10493329	0.86[EUR][1000 genomes]
rs10789127	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10789128	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10889367	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10889377	0.89[EUR][1000 genomes]
rs10889378	0.89[EUR][1000 genomes]
rs10889379	0.86[EUR][1000 genomes]
rs10889380	0.86[EUR][1000 genomes]
rs10889381	0.84[EUR][1000 genomes]
rs11208011	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208012	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208014	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208015	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11208016	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11208017	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11208029	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11208030	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11208031	0.86[EUR][1000 genomes]
rs11208033	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11208034	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11208039	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11208041	0.82[EUR][1000 genomes]
rs11208042	0.82[EUR][1000 genomes]
rs11208048	0.82[AMR][1000 genomes]
rs12066524	0.82[AMR][1000 genomes]
rs12067646	0.87[EUR][1000 genomes]
rs12078873	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12080049	0.89[EUR][1000 genomes]
rs12083738	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12084633	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12085400	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12087034	0.80[AMR][1000 genomes]
rs12090494	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12096696	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12097658	0.80[AMR][1000 genomes]
rs12116959	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12117272	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12121207	0.89[EUR][1000 genomes]
rs12122041	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12125325	0.82[EUR][1000 genomes]
rs12126307	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12129322	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12129355	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132170	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12132297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133142	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12133507	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141183	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143139	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12409274	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123817	0.89[EUR][1000 genomes]
rs17123830	0.89[EUR][1000 genomes]
rs17123896	0.82[EUR][1000 genomes]
rs17388170	0.92[EUR][1000 genomes]
rs1927484	0.86[EUR][1000 genomes]
rs1927485	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1927486	0.84[EUR][1000 genomes]
rs3737891	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4370785	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4409690	0.84[EUR][1000 genomes]
rs4457613	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55835075	0.84[EUR][1000 genomes]
rs55936326	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55954926	0.82[AMR][1000 genomes]
rs56280875	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56305462	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56329995	0.92[EUR][1000 genomes]
rs57653096	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58583743	0.86[EUR][1000 genomes]
rs59317258	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60528349	0.88[EUR][1000 genomes]
rs61765879	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61765883	0.89[EUR][1000 genomes]
rs61775965	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6587988	0.86[EUR][1000 genomes]
rs6657622	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658682	0.89[EUR][1000 genomes]
rs7416683	0.88[EUR][1000 genomes]
rs7513999	0.89[EUR][1000 genomes]
rs7533354	0.89[EUR][1000 genomes]
rs7546879	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs943696	0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12131553	DOCK7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63200200-63210600	Weak transcription	Fetal Stomach	stomach
2	chr1:63200200-63212200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr1:63202000-63210800	Weak transcription	HepG2	liver
4	chr1:63208800-63220400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:63209000-63210400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:63210000-63210400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:63210000-63211200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:63210000-63212000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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