Variant report

Variant	rs12409274
Chromosome Location	chr1:63206227-63206228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10493328	0.82[EUR][1000 genomes]
rs10493329	0.84[EUR][1000 genomes]
rs10789127	0.82[EUR][1000 genomes]
rs10789128	0.81[EUR][1000 genomes]
rs10889367	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10889377	0.87[EUR][1000 genomes]
rs10889378	0.87[EUR][1000 genomes]
rs10889379	0.84[EUR][1000 genomes]
rs10889380	0.84[EUR][1000 genomes]
rs10889381	0.82[EUR][1000 genomes]
rs11208011	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208012	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208014	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208015	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11208016	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11208017	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11208029	0.84[EUR][1000 genomes]
rs11208030	0.84[EUR][1000 genomes]
rs11208031	0.84[EUR][1000 genomes]
rs11208033	0.82[EUR][1000 genomes]
rs11208034	0.82[EUR][1000 genomes]
rs11208039	0.83[EUR][1000 genomes]
rs12067646	0.85[EUR][1000 genomes]
rs12078873	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12080049	0.87[EUR][1000 genomes]
rs12083738	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12084633	0.90[EUR][1000 genomes]
rs12085400	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12096696	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12116959	0.90[EUR][1000 genomes]
rs12117272	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12121207	0.87[EUR][1000 genomes]
rs12122041	0.82[EUR][1000 genomes]
rs12126307	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12129322	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12129355	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12131553	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132170	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12132297	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133142	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12133507	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141183	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143139	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123817	0.87[EUR][1000 genomes]
rs17123830	0.87[EUR][1000 genomes]
rs17388170	0.90[EUR][1000 genomes]
rs1927484	0.84[EUR][1000 genomes]
rs1927485	0.82[EUR][1000 genomes]
rs1927486	0.82[EUR][1000 genomes]
rs3737891	0.83[EUR][1000 genomes]
rs4370785	0.84[EUR][1000 genomes]
rs4409690	0.82[EUR][1000 genomes]
rs4457613	0.84[EUR][1000 genomes]
rs55835075	0.82[EUR][1000 genomes]
rs55936326	0.90[EUR][1000 genomes]
rs56280875	0.90[EUR][1000 genomes]
rs56305462	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56329995	0.90[EUR][1000 genomes]
rs57653096	0.90[EUR][1000 genomes]
rs58583743	0.84[EUR][1000 genomes]
rs59317258	0.90[EUR][1000 genomes]
rs60528349	0.86[EUR][1000 genomes]
rs61765879	0.92[EUR][1000 genomes]
rs61765883	0.87[EUR][1000 genomes]
rs61775965	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6587988	0.84[EUR][1000 genomes]
rs6657622	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658682	0.87[EUR][1000 genomes]
rs7416683	0.86[EUR][1000 genomes]
rs7513999	0.87[EUR][1000 genomes]
rs7533354	0.87[EUR][1000 genomes]
rs7546879	0.90[EUR][1000 genomes]
rs943696	0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12409274	DOCK7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63200200-63210600	Weak transcription	Fetal Stomach	stomach
2	chr1:63200200-63212200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr1:63202000-63210800	Weak transcription	HepG2	liver
4	chr1:63206000-63206400	Enhancers	GM12878-XiMat	blood

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