Variant report

Variant	rs6657622
Chromosome Location	chr1:63214530-63214531
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10493328	0.87[EUR][1000 genomes]
rs10493329	0.89[EUR][1000 genomes]
rs10789127	0.87[EUR][1000 genomes]
rs10789128	0.86[EUR][1000 genomes]
rs10889367	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10889377	0.92[EUR][1000 genomes]
rs10889378	0.92[EUR][1000 genomes]
rs10889379	0.89[EUR][1000 genomes]
rs10889380	0.89[EUR][1000 genomes]
rs10889381	0.87[EUR][1000 genomes]
rs11208011	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208012	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208014	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208015	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11208016	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11208017	0.92[EUR][1000 genomes]
rs11208029	0.89[EUR][1000 genomes]
rs11208030	0.89[EUR][1000 genomes]
rs11208031	0.89[EUR][1000 genomes]
rs11208033	0.87[EUR][1000 genomes]
rs11208034	0.87[EUR][1000 genomes]
rs11208039	0.82[EUR][1000 genomes]
rs11208041	0.85[EUR][1000 genomes]
rs11208042	0.85[EUR][1000 genomes]
rs11208044	0.83[EUR][1000 genomes]
rs12066524	0.83[EUR][1000 genomes]
rs12067646	0.90[EUR][1000 genomes]
rs12078873	0.92[EUR][1000 genomes]
rs12080049	0.92[EUR][1000 genomes]
rs12083738	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12084633	0.89[EUR][1000 genomes]
rs12085400	0.92[EUR][1000 genomes]
rs12085401	0.83[EUR][1000 genomes]
rs12087034	0.82[EUR][1000 genomes]
rs12090494	0.85[EUR][1000 genomes]
rs12096696	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12097658	0.83[EUR][1000 genomes]
rs12116959	0.89[EUR][1000 genomes]
rs12117272	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12121207	0.92[EUR][1000 genomes]
rs12122041	0.87[EUR][1000 genomes]
rs12125325	0.85[EUR][1000 genomes]
rs12126307	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12129322	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12129355	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12131553	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132170	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12132297	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133142	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12133507	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135672	0.83[EUR][1000 genomes]
rs12141183	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143139	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12409274	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123817	0.92[EUR][1000 genomes]
rs17123830	0.92[EUR][1000 genomes]
rs17123896	0.85[EUR][1000 genomes]
rs17123899	0.83[EUR][1000 genomes]
rs17388170	0.89[EUR][1000 genomes]
rs1927484	0.85[EUR][1000 genomes]
rs1927485	0.87[EUR][1000 genomes]
rs1927486	0.87[EUR][1000 genomes]
rs3737891	0.82[EUR][1000 genomes]
rs4370785	0.89[EUR][1000 genomes]
rs4409690	0.87[EUR][1000 genomes]
rs4457613	0.89[EUR][1000 genomes]
rs55835075	0.87[EUR][1000 genomes]
rs55936326	0.89[EUR][1000 genomes]
rs55954926	0.83[EUR][1000 genomes]
rs56280875	0.89[EUR][1000 genomes]
rs56305462	0.92[EUR][1000 genomes]
rs56329995	0.89[EUR][1000 genomes]
rs56935211	0.82[EUR][1000 genomes]
rs57653096	0.89[EUR][1000 genomes]
rs58583743	0.89[EUR][1000 genomes]
rs59317258	0.89[EUR][1000 genomes]
rs60528349	0.91[EUR][1000 genomes]
rs61765879	0.91[EUR][1000 genomes]
rs61765883	0.92[EUR][1000 genomes]
rs61775965	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6587988	0.89[EUR][1000 genomes]
rs6658682	0.92[EUR][1000 genomes]
rs7416683	0.91[EUR][1000 genomes]
rs7513999	0.92[EUR][1000 genomes]
rs7533354	0.92[EUR][1000 genomes]
rs7546879	0.89[EUR][1000 genomes]
rs943696	0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6657622	DOCK7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63208800-63220400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:63210800-63215400	Weak transcription	Liver	Liver
3	chr1:63211000-63222200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:63212200-63217000	Weak transcription	Fetal Stomach	stomach
5	chr1:63212400-63215600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr1:63212400-63216400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:63212400-63216600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:63212400-63216800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:63212400-63218600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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